Os05g0512500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CT20 family protein.
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Os05g0512500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CT20 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.5 | 0.218 | 11.4 | -0.207 | 0.454 | -0.614 | -0.335 | 0.291 | -0.0123 | 14.5 | 30.07 | 14 | -- | -- |
| 21.58 | 0.216 | 11.4 | -0.165 | 0.455 | -0.612 | -0.417 | -- | 0.00679 | 14.4 | 30 | 14 | -- | -- |
| 21.78 | 0.217 | 11.4 | -0.249 | 0.454 | -0.599 | -- | 0.581 | -0.0224 | 14.4 | 30.11 | 15 | -- | -- |
| 22.23 | 0.22 | 11.4 | -0.166 | 0.462 | -0.593 | -- | -- | -0.00638 | 14.4 | 28.77 | 21 | -- | -- |
| 30.11 | 0.257 | 11.4 | -0.354 | -- | -1.05 | -- | 0.451 | -0.111 | -- | 30.11 | 15 | -- | -- |
| 26.66 | 0.242 | 11.4 | -0.0115 | 0.658 | -- | -0.347 | -- | 0.12 | 14.4 | -- | -- | -- | -- |
| 27.1 | 0.244 | 11.4 | -0.0209 | 0.657 | -- | -- | -- | 0.118 | 14.4 | -- | -- | -- | -- |
| 30.32 | 0.256 | 11.4 | -0.283 | -- | -1.06 | -- | -- | -0.0926 | -- | 30 | 13 | -- | -- |
| 22.88 | 0.224 | 11.4 | -- | 0.489 | -0.52 | -- | -- | 0.0277 | 14.5 | 28.78 | 19 | -- | -- |
| 52.64 | 0.339 | 11.4 | -0.0487 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 27.11 | 0.244 | 11.4 | -- | 0.657 | -- | -- | -- | 0.12 | 14.4 | -- | -- | -- | -- |
| 32.31 | 0.266 | 11.4 | -- | -- | -0.971 | -- | -- | -0.0475 | -- | 30.12 | 12 | -- | -- |
| 52.71 | 0.339 | 11.4 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 3 | 20.35 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 9 | 20.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 12 | 20.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 13 | 20.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 18 | 20.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 30 | 20.73 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 40 | 20.76 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 50 | 20.84 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 51 | 20.85 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 69 | 20.96 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 80 | 21.03 | radiation | 10 | 43200 | > th | dose independent | sin | 11 | NA |
| 81 | 21.03 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 103 | 21.07 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 117 | 21.12 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 118 | 21.12 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 139 | 21.14 | radiation | 20 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 162 | 21.18 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 164 | 21.19 | radiation | 20 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 167 | 21.19 | radiation | 20 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 271 | 21.26 | radiation | 20 | 43200 | > th | dose independent | sin | 1 | NA |
| 290 | 21.26 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 308 | 21.28 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 355 | 21.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 357 | 21.30 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 367 | 21.31 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 371 | 21.31 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 373 | 21.32 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 507 | 21.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 518 | 21.35 | radiation | 10 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 538 | 21.35 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 539 | 21.35 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 579 | 21.37 | radiation | 20 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 591 | 21.38 | humidity | 70 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 620 | 21.38 | humidity | 60 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 628 | 21.39 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 654 | 21.40 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 678 | 21.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 686 | 21.42 | radiation | 20 | 43200 | < th | dose dependent | sin | 2 | NA |
| 706 | 21.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 709 | 21.43 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 729 | 21.44 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 744 | 21.45 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 745 | 21.45 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 756 | 21.45 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 769 | 21.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 797 | 21.47 | humidity | 70 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 859 | 21.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 863 | 21.49 | humidity | 70 | 43200 | < th | dose independent | sin | 23 | NA |
| 958 | 21.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |