Os05g0512400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0512400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.02 | 0.433 | 7.04 | 1.39 | 1.79 | 0.972 | 1.61 | 1.38 | 0.321 | 17.3 | 20.44 | 1206 | -- | -- |
| 89.3 | 0.44 | 7.08 | 1.18 | 1.77 | 0.86 | 1.68 | -- | 0.247 | 17.2 | 20.6 | 1136 | -- | -- |
| 91.32 | 0.445 | 7.04 | 1.36 | 1.8 | 0.957 | -- | 1.2 | 0.32 | 17.2 | 20.4 | 1065 | -- | -- |
| 94.44 | 0.453 | 7.08 | 1.18 | 1.78 | 0.792 | -- | -- | 0.266 | 17.2 | 20.6 | 1065 | -- | -- |
| 230.59 | 0.707 | 7.01 | 1.29 | -- | 1.26 | -- | 1.7 | 0.26 | -- | 20.2 | 336 | -- | -- |
| 103.75 | 0.478 | 7.04 | 1.47 | 1.77 | -- | 1.66 | -- | 0.446 | 17.4 | -- | -- | -- | -- |
| 110.58 | 0.492 | 7.04 | 1.46 | 1.78 | -- | -- | -- | 0.453 | 17.4 | -- | -- | -- | -- |
| 161.8 | 0.592 | 7.09 | 1.06 | -- | 1.24 | -- | -- | 0.0299 | -- | 25.8 | 314 | -- | -- |
| 110.81 | 0.49 | 7.12 | -- | 1.78 | 1.36 | -- | -- | 0.0146 | 17.5 | 20.19 | 6968 | -- | -- |
| 275.05 | 0.775 | 7.01 | 1.4 | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
| 166.9 | 0.604 | 7.07 | -- | 1.75 | -- | -- | -- | 0.29 | 17.5 | -- | -- | -- | -- |
| 191.79 | 0.645 | 7.12 | -- | -- | 1.39 | -- | -- | -0.119 | -- | 25.9 | 315 | -- | -- |
| 326.9 | 0.844 | 7.05 | -- | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 2 | 72.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 3 | 72.81 | temperature | 15 | 90 | > th | dose dependent | sin | 5 | NA |
| 7 | 73.42 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 17 | 74.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 18 | 74.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 50 | 75.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 226 | 79.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 236 | 80.13 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 261 | 80.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 322 | 81.47 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 12 |
| 332 | 81.61 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 10 |
| 347 | 81.74 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 14 |
| 394 | 82.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 398 | 82.14 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 427 | 82.40 | temperature | 25 | 90 | < th | dose independent | sin | 4 | NA |
| 449 | 82.57 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 460 | 82.63 | temperature | 20 | 270 | > th | dose independent | sin | 5 | NA |
| 527 | 83.07 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 5 |
| 547 | 83.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 554 | 83.22 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 601 | 83.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 5 |
| 619 | 83.55 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 631 | 83.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 701 | 83.95 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 2 |
| 703 | 83.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 718 | 84.01 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 20 |
| 757 | 84.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 845 | 84.52 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 20 |
| 859 | 84.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 871 | 84.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 889 | 84.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 960 | 84.87 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |