Os05g0511400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase GhCLK1 (Fragment).
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Os05g0511400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase GhCLK1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.01 | 0.182 | 12.4 | 0.12 | 0.112 | -0.461 | 0.101 | 0.666 | 0.111 | 0.776 | 24.16 | 98 | -- | -- |
| 15.19 | 0.182 | 12.4 | 0.0184 | 0.118 | -0.408 | 0.0119 | -- | 0.0862 | 1 | 24.1 | 97 | -- | -- |
| 15.04 | 0.181 | 12.4 | 0.107 | 0.11 | -0.453 | -- | 0.574 | 0.107 | 1.01 | 24.14 | 95 | -- | -- |
| 15.17 | 0.181 | 12.4 | 0.023 | 0.117 | -0.407 | -- | -- | 0.0819 | 1.08 | 24.2 | 90 | -- | -- |
| 15.6 | 0.184 | 12.4 | 0.134 | -- | -0.546 | -- | 0.651 | 0.123 | -- | 24.12 | 81 | -- | -- |
| 17.77 | 0.198 | 12.4 | -0.0437 | 0.277 | -- | 0.0796 | -- | 0.0369 | 2.63 | -- | -- | -- | -- |
| 17.79 | 0.198 | 12.4 | -0.0457 | 0.277 | -- | -- | -- | 0.0364 | 2.66 | -- | -- | -- | -- |
| 15.8 | 0.185 | 12.4 | 0.0445 | -- | -0.493 | -- | -- | 0.0974 | -- | 24.1 | 70 | -- | -- |
| 15.19 | 0.182 | 12.4 | -- | 0.123 | -0.392 | -- | -- | 0.0801 | 1.3 | 24.2 | 89 | -- | -- |
| 22.27 | 0.221 | 12.4 | -0.0339 | -- | -- | -- | -- | 0.0434 | -- | -- | -- | -- | -- |
| 17.85 | 0.198 | 12.4 | -- | 0.276 | -- | -- | -- | 0.0415 | 2.66 | -- | -- | -- | -- |
| 15.85 | 0.185 | 12.4 | -- | -- | -0.488 | -- | -- | 0.092 | -- | 24.1 | 69 | -- | -- |
| 22.3 | 0.22 | 12.4 | -- | -- | -- | -- | -- | 0.0471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 2 | 14.49 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 10 | 14.68 | temperature | 20 | 10 | > th | dose dependent | sin | 20 | NA |
| 24 | 14.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 25 | 14.74 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 29 | 14.75 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 34 | 14.76 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 43 | 14.77 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 15 |
| 82 | 14.87 | temperature | 10 | 10 | > th | dose dependent | sin | 20 | NA |
| 164 | 14.96 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 223 | 15.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 239 | 15.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 265 | 15.06 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 274 | 15.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 277 | 15.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 21 |
| 283 | 15.07 | temperature | 30 | 30 | < th | dose dependent | sin | 20 | NA |
| 294 | 15.07 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 323 | 15.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 389 | 15.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 427 | 15.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 450 | 15.19 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 17 |
| 455 | 15.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 460 | 15.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 484 | 15.22 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 6 |
| 526 | 15.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 537 | 15.26 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 19 |
| 575 | 15.28 | temperature | 25 | 90 | > th | dose independent | sin | 21 | NA |
| 633 | 15.31 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 18 |
| 662 | 15.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 667 | 15.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 685 | 15.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 707 | 15.34 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 10 |
| 859 | 15.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 889 | 15.40 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 11 |
| 954 | 15.42 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 979 | 15.44 | temperature | 25 | 90 | < th | dose independent | sin | 21 | NA |