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Os05g0509400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA binding protein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0123) R2 : 0.0369
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.108 (0.0259) R2dN8 : 0.0476 R2N8 : 0.0369
σ : 0.232
deviance : 24.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
10.24 0.15 10.8 0.658 0.101 0.214 -0.114 0.38 0.187 18.5 70 1181 -- --
10.48 0.151 10.7 0.689 0.115 0.233 -0.107 -- 0.218 18.8 70.55 1161 -- --
10.27 0.149 10.8 0.66 0.101 0.218 -- 0.386 0.187 18.8 69.98 1180 -- --
10.44 0.15 10.7 0.707 0.102 0.247 -- -- 0.219 18.9 71.1 1175 -- --
10.77 0.153 10.8 0.656 -- 0.214 -- 0.387 0.187 -- 69.98 1214 -- --
12.57 0.166 10.8 0.66 0.115 -- -0.0838 -- 0.184 16.7 -- -- -- --
12.58 0.166 10.8 0.66 0.114 -- -- -- 0.184 16.5 -- -- -- --
10.93 0.154 10.7 0.708 -- 0.249 -- -- 0.218 -- 71 1239 -- --
22.57 0.221 10.8 -- 0.101 0.298 -- -- 0.195 18.8 75 3961 -- --
13.28 0.17 10.8 0.655 -- -- -- -- 0.181 -- -- -- -- --
24.06 0.229 10.8 -- 0.102 -- -- -- 0.11 16.7 -- -- -- --
16.53 0.189 10.8 -- -- 0.564 -- -- 0.0817 -- 64.99 47520 -- --
24.61 0.232 10.8 -- -- -- -- -- 0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.35 temperature 25.0 270 < th dose independent rect. 24 6
5 10.45 humidity 50.0 270 > th dose dependent rect. 17 8
7 10.48 humidity 70.0 1440 > th dose independent rect. 17 19
10 10.51 humidity 70.0 1440 < th dose independent rect. 16 20
11 10.52 humidity 50.0 4320 > th dose independent rect. 15 1
12 10.52 humidity 60.0 14400 < th dose independent rect. 16 2
22 10.56 humidity 60.0 14400 > th dose independent rect. 17 1
23 10.56 humidity 60.0 14400 < th dose independent rect. 16 17
28 10.57 humidity 80.0 1440 < th dose dependent rect. 15 21
49 10.59 precipitation 0.1 270 < th dose independent rect. 1 16
54 10.59 humidity 60.0 4320 < th dose dependent rect. 15 4
68 10.59 precipitation 0.1 270 < th dose dependent rect. 1 16
71 10.59 wind 9.0 270 < th dose dependent rect. 5 20
73 10.59 radiation 1.0 270 < th dose dependent rect. 5 20
79 10.61 precipitation 0.1 270 < th dose independent rect. 14 15
81 10.61 precipitation 0.1 270 < th dose dependent rect. 14 15
85 10.62 humidity 70.0 1440 > th dose independent sin 10 NA
88 10.62 wind 5.0 270 < th dose independent rect. 5 20
93 10.62 wind 9.0 270 < th dose dependent rect. 6 18
114 10.63 humidity 60.0 10 > th dose dependent rect. 18 9
116 10.63 radiation 10.0 270 < th dose dependent rect. 15 10
126 10.64 radiation 10.0 270 < th dose dependent rect. 17 8
133 10.65 humidity 80.0 1440 < th dose independent rect. 7 3
134 10.65 humidity 80.0 1440 < th dose independent rect. 7 5
137 10.65 radiation 1.0 270 < th dose independent rect. 7 18
139 10.65 humidity 60.0 1440 > th dose dependent rect. 11 1
140 10.66 humidity 70.0 1440 < th dose independent sin 10 NA
141 10.66 humidity 70.0 1440 > th dose independent rect. 9 1
148 10.66 wind 9.0 43200 > th dose dependent rect. 12 1
161 10.67 temperature 30.0 270 < th dose independent rect. 17 8
162 10.67 humidity 60.0 270 > th dose independent rect. 17 8
164 10.67 wind 5.0 270 < th dose independent rect. 6 18
173 10.68 humidity 80.0 1440 > th dose independent rect. 7 3
182 10.68 radiation 10.0 270 < th dose independent rect. 15 10
184 10.68 humidity 70.0 1440 > th dose independent rect. 8 12
185 10.68 humidity 50.0 4320 > th dose independent rect. 14 12
208 10.68 humidity 60.0 4320 < th dose dependent sin 12 NA
212 10.68 radiation 10.0 270 < th dose dependent rect. 10 15
215 10.69 humidity 50.0 4320 > th dose independent sin 13 NA
216 10.69 humidity 60.0 14400 < th dose independent sin 12 NA
226 10.69 radiation 10.0 270 < th dose independent rect. 17 8
251 10.69 humidity 70.0 14400 < th dose dependent rect. 17 1
254 10.69 radiation 40.0 270 < th dose dependent rect. 11 14
264 10.70 humidity 70.0 1440 > th dose independent no NA NA
285 10.70 radiation 1.0 270 < th dose independent rect. 12 13
357 10.70 humidity 60.0 1440 > th dose dependent rect. 7 6
364 10.70 radiation 1.0 90 < th dose dependent rect. 5 22
392 10.71 humidity 70.0 1440 > th dose independent rect. 11 23
397 10.71 radiation 40.0 270 < th dose dependent rect. 13 12
403 10.71 humidity 50.0 270 > th dose dependent rect. 6 19
409 10.72 humidity 70.0 1440 < th dose independent rect. 9 3
411 10.72 atmosphere 995.0 270 > th dose independent rect. 17 8
413 10.72 humidity 70.0 1440 < th dose independent rect. 8 12
428 10.72 humidity 80.0 1440 < th dose dependent no NA NA
440 10.72 humidity 70.0 14400 < th dose dependent rect. 17 16
441 10.72 humidity 80.0 1440 < th dose dependent rect. 7 18
444 10.72 humidity 80.0 1440 < th dose dependent rect. 4 20
453 10.72 humidity 80.0 1440 < th dose dependent rect. 1 22
467 10.72 humidity 80.0 1440 < th dose dependent rect. 21 23
471 10.73 humidity 70.0 1440 > th dose independent rect. 9 3
474 10.73 precipitation 0.1 270 < th dose independent rect. 1 4
496 10.73 humidity 50.0 4320 < th dose independent rect. 15 20
500 10.73 precipitation 0.1 270 < th dose dependent rect. 1 4
505 10.73 humidity 80.0 1440 < th dose dependent rect. 7 15
508 10.73 humidity 50.0 270 > th dose dependent rect. 7 17
517 10.73 humidity 80.0 1440 < th dose dependent rect. 1 19
542 10.73 humidity 80.0 1440 < th dose dependent rect. 11 23
549 10.74 humidity 70.0 1440 < th dose independent no NA NA
560 10.74 temperature 10.0 270 > th dose independent rect. 17 8
578 10.74 temperature 10.0 270 > th dose independent rect. 1 16
583 10.74 atmosphere 1015.0 270 < th dose independent rect. 1 16
662 10.74 humidity 80.0 1440 < th dose dependent rect. 7 13
694 10.75 wind 9.0 270 < th dose independent rect. 17 8
697 10.75 humidity 70.0 270 > th dose independent rect. 15 10
749 10.76 humidity 70.0 1440 > th dose independent sin 20 NA
754 10.76 humidity 70.0 1440 < th dose independent rect. 9 1
756 10.76 temperature 25.0 90 < th dose independent rect. 3 4
779 10.76 humidity 70.0 1440 < th dose independent rect. 19 23
781 10.76 humidity 80.0 1440 < th dose dependent sin 10 NA
782 10.76 humidity 90.0 1440 < th dose dependent sin 2 NA
896 10.77 humidity 90.0 1440 < th dose dependent rect. 6 7
961 10.78 wind 9.0 270 < th dose independent rect. 1 16
973 10.78 humidity 50.0 270 > th dose independent rect. 5 20
982 10.78 humidity 50.0 1440 > th dose dependent sin 1 NA
992 10.78 humidity 50.0 1440 > th dose dependent rect. 7 13