Os05g0509200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NADH dehydrogenase (ubiquinone), 24 kDa subunit family protein.
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Os05g0509200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NADH dehydrogenase (ubiquinone), 24 kDa subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7.93 | 0.132 | 12.2 | 0.0134 | 0.367 | 0.351 | 0.173 | 0.389 | 0.102 | 3.43 | 20.46 | 694 | -- | -- |
| 8.08 | 0.132 | 12.2 | -0.0643 | 0.372 | 0.374 | 0.222 | -- | 0.0894 | 3.48 | 21.18 | 692 | -- | -- |
| 7.99 | 0.132 | 12.2 | 0.00533 | 0.327 | 0.338 | -- | 0.354 | 0.0983 | 3.22 | 20.54 | 845 | -- | -- |
| 8.12 | 0.133 | 12.2 | -0.0738 | 0.329 | 0.35 | -- | -- | 0.0816 | 3.33 | 21.3 | 828 | -- | -- |
| 13.4 | 0.171 | 12.2 | 0.0189 | -- | 0.374 | -- | 0.492 | 0.1 | -- | 19.14 | 2527 | -- | -- |
| 10.87 | 0.155 | 12.2 | 0.0275 | 0.343 | -- | 0.156 | -- | 0.145 | 2.14 | -- | -- | -- | -- |
| 10.96 | 0.155 | 12.2 | 0.0229 | 0.344 | -- | -- | -- | 0.144 | 2.17 | -- | -- | -- | -- |
| 13.53 | 0.171 | 12.2 | -0.0927 | -- | 0.359 | -- | -- | 0.0777 | -- | 22.2 | 2545 | -- | -- |
| 8.25 | 0.134 | 12.2 | -- | 0.335 | 0.334 | -- | -- | 0.0931 | 3.32 | 21.6 | 806 | -- | -- |
| 18.02 | 0.198 | 12.2 | 0.0373 | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
| 10.98 | 0.155 | 12.2 | -- | 0.344 | -- | -- | -- | 0.142 | 2.17 | -- | -- | -- | -- |
| 13.02 | 0.168 | 12.2 | -- | -- | 0.381 | -- | -- | 0.0857 | -- | 22.21 | 1085 | -- | -- |
| 18.06 | 0.198 | 12.2 | -- | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 2 | 7.88 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 5 | 7.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 10 | 7.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 17 | 7.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 22 | 7.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 24 | 7.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 25 | 7.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 27 | 7.95 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 28 | 7.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 42 | 7.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 61 | 7.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 62 | 7.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 63 | 7.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 19 |
| 80 | 7.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 81 | 7.98 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 118 | 7.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 131 | 8.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 21 |
| 176 | 8.03 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 194 | 8.04 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 195 | 8.04 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 196 | 8.04 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 6 |
| 201 | 8.04 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 13 |
| 204 | 8.04 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 14 |
| 211 | 8.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 239 | 8.05 | temperature | 10 | 4320 | > th | dose dependent | sin | 7 | NA |
| 240 | 8.05 | temperature | 10 | 4320 | > th | dose dependent | sin | 5 | NA |
| 242 | 8.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 243 | 8.05 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 260 | 8.05 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 12 |
| 335 | 8.06 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 338 | 8.06 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 343 | 8.06 | temperature | 30 | 4320 | < th | dose dependent | sin | 7 | NA |
| 344 | 8.06 | temperature | 30 | 4320 | < th | dose dependent | sin | 5 | NA |
| 346 | 8.06 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 348 | 8.06 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 491 | 8.07 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 493 | 8.07 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 494 | 8.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 495 | 8.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 496 | 8.07 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 595 | 8.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 599 | 8.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 23 |
| 629 | 8.07 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 689 | 8.08 | radiation | 20 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 731 | 8.08 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 21 |
| 732 | 8.08 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 21 |
| 740 | 8.08 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 21 |
| 807 | 8.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 808 | 8.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 874 | 8.09 | radiation | 10 | 4320 | < th | dose dependent | rect. | 14 | 17 |
| 887 | 8.09 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 19 |
| 915 | 8.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 20 |
| 959 | 8.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 22 |