Os05g0508900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0508900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.29 | 0.41 | 14.4 | -0.921 | 1.23 | -1.59 | -0.311 | 3 | -0.915 | 12.2 | 19.46 | 696 | 16.2 | 5.23 |
| 80.4 | 0.418 | 14.4 | -1.21 | 1.13 | -1.56 | -1.41 | -- | -0.951 | 12 | 18.02 | 697 | 16 | 5.75 |
| 76.33 | 0.407 | 14.4 | -0.93 | 1.14 | -1.66 | -- | 3.16 | -0.918 | 12.3 | 18.62 | 688 | 16.1 | 5.32 |
| 87.49 | 0.436 | 14.5 | -1.28 | 1.13 | -1.6 | -- | -- | -0.998 | 12.2 | 17.9 | 683 | 16.2 | 5.34 |
| 78.96 | 0.414 | 14.5 | -1.01 | -- | -2.78 | -- | 3.25 | -0.921 | -- | 11.69 | 683 | 15.7 | 6.27 |
| 116.04 | 0.505 | 14.5 | -1.55 | 2.13 | -- | -0.945 | -- | -1.12 | 12.4 | -- | -- | -- | -- |
| 119.89 | 0.513 | 14.5 | -1.58 | 2.13 | -- | -- | -- | -1.12 | 12.4 | -- | -- | -- | -- |
| 86.71 | 0.434 | 14.5 | -1.32 | -- | -2.58 | -- | -- | -0.977 | -- | 7.773 | 692 | 15.7 | 5.82 |
| 132.62 | 0.536 | 14.4 | -- | 0.133 | -2.64 | -- | -- | -0.84 | 11.5 | 13.16 | 695 | 15.7 | 6.02 |
| 405.45 | 0.941 | 14.5 | -1.65 | -- | -- | -- | -- | -1.16 | -- | -- | -- | -- | -- |
| 185.93 | 0.638 | 14.4 | -- | 2.15 | -- | -- | -- | -0.945 | 12.4 | -- | -- | -- | -- |
| 132.52 | 0.536 | 14.4 | -- | -- | -2.75 | -- | -- | -0.855 | -- | 12.02 | 695 | 15.7 | 5.85 |
| 477.7 | 1.02 | 14.5 | -- | -- | -- | -- | -- | -0.972 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 8 | 78.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 20 | 79.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 46 | 81.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 60 | 81.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 119 | 84.30 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 146 | 85.04 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 8 |
| 166 | 85.44 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 7 |
| 212 | 86.19 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 222 | 86.36 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 267 | 86.82 | temperature | 30 | 270 | < th | dose dependent | sin | 13 | NA |
| 272 | 86.85 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 460 | 88.94 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 2 |
| 471 | 89.07 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 566 | 89.72 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 578 | 89.83 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 590 | 89.96 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 606 | 89.99 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 12 |
| 998 | 92.30 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 2 |