Os05g0507200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L38.
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Os05g0507200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L38.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 344.44 | 0.872 | 6.37 | 1.5 | 0.19 | 1.49 | 0.195 | -4.32 | -2.88 | 20.6 | 21.65 | 10362 | -- | -- |
| 347.74 | 0.869 | 6.22 | 1.85 | 0.192 | 2.1 | 0.146 | -- | -2.65 | 20.5 | 7.484 | 23281 | -- | -- |
| 344.55 | 0.865 | 6.37 | 1.5 | 0.189 | 1.49 | -- | -4.3 | -2.87 | 20.4 | 21.77 | 10380 | -- | -- |
| 347.81 | 0.869 | 6.22 | 1.85 | 0.194 | 2.1 | -- | -- | -2.65 | 20.5 | 7.381 | 23275 | -- | -- |
| 346.37 | 0.867 | 6.39 | 1.33 | -- | 1.52 | -- | -4.87 | -2.94 | -- | 22.58 | 10456 | -- | -- |
| 413.43 | 0.953 | 6.04 | 3.66 | 0.22 | -- | 0.231 | -- | -1.87 | 21.5 | -- | -- | -- | -- |
| 413.63 | 0.952 | 6.04 | 3.65 | 0.22 | -- | -- | -- | -1.87 | 21.4 | -- | -- | -- | -- |
| 349.66 | 0.871 | 6.21 | 1.83 | -- | 2.08 | -- | -- | -2.66 | -- | 9.412 | 23706 | -- | -- |
| 369.43 | 0.895 | 6.35 | -- | 0.19 | 3.2 | -- | -- | -3.24 | 20.2 | -7.37 | 47520 | -- | -- |
| 416.46 | 0.954 | 6.04 | 3.65 | -- | -- | -- | -- | -1.88 | -- | -- | -- | -- | -- |
| 764.42 | 1.29 | 6.13 | -- | 0.234 | -- | -- | -- | -2.28 | 22.6 | -- | -- | -- | -- |
| 371.42 | 0.898 | 6.34 | -- | -- | 3.2 | -- | -- | -3.24 | -- | -1.272 | 47520 | -- | -- |
| 767.77 | 1.29 | 6.13 | -- | -- | -- | -- | -- | -2.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 337.37 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 3 | 337.88 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 7 | 340.41 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 8 | 340.64 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 11 | 341.85 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 24 | 342.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 27 | 342.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 28 | 342.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 49 | 343.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 59 | 343.58 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 67 | 343.69 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 80 | 344.10 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 82 | 344.14 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 96 | 344.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 101 | 344.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 104 | 344.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 116 | 344.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 118 | 344.57 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 128 | 344.64 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 134 | 344.71 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 136 | 344.71 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 154 | 344.81 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 155 | 344.81 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 164 | 344.88 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 167 | 344.90 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 184 | 344.95 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 223 | 345.10 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 249 | 345.23 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 252 | 345.25 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 259 | 345.26 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 266 | 345.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 281 | 345.31 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 283 | 345.32 | temperature | 25 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 307 | 345.37 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 308 | 345.37 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 309 | 345.37 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 323 | 345.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 17 |
| 338 | 345.42 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 341 | 345.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 21 |
| 351 | 345.45 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 374 | 345.48 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 401 | 345.52 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 404 | 345.52 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 9 |
| 414 | 345.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 7 |
| 419 | 345.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 420 | 345.54 | temperature | 20 | 43200 | < th | dose independent | sin | 11 | NA |
| 435 | 345.55 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 510 | 345.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 519 | 345.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 527 | 345.67 | temperature | 20 | 43200 | > th | dose independent | sin | 11 | NA |
| 540 | 345.68 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 17 |
| 644 | 345.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 657 | 345.80 | temperature | 20 | 43200 | < th | dose dependent | sin | 18 | NA |
| 661 | 345.81 | temperature | 25 | 14400 | > th | dose independent | sin | 2 | NA |
| 702 | 345.84 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 754 | 345.91 | temperature | 20 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 792 | 345.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 16 |
| 816 | 345.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 845 | 346.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 860 | 346.03 | radiation | 1 | 43200 | < th | dose dependent | sin | 17 | NA |
| 876 | 346.05 | temperature | 25 | 14400 | < th | dose independent | sin | 2 | NA |
| 902 | 346.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 971 | 346.12 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 989 | 346.14 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 1 |