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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0506400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0464) R2 : 0.171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.8 (0.212) R2dE : 0.141 R2E : 0.158
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.236 (0.1) R2dN8 : 0.0138 R2N8 : 0.0306
σ : 0.865
deviance : 345.18
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 9.912
memory length : 587
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.3 0.856 4.5 0.468 0.638 -2.15 0.242 1.82 -0.113 12.9 10.41 237 -- --
334.33 0.852 4.54 0.186 0.662 -2.13 0.512 -- -0.188 12.9 13.58 218 -- --
332.5 0.849 4.5 0.505 0.64 -2.16 -- 2.01 -0.106 13 10.35 235 -- --
335.41 0.853 4.54 0.207 0.647 -2.12 -- -- -0.186 13.1 12.55 234 -- --
341.58 0.861 4.51 0.527 -- -1.91 -- 1.92 -0.116 -- 6.99 606 -- --
380.09 0.914 4.6 -0.276 0.534 -- 0.789 -- -0.485 8.9 -- -- -- --
382.21 0.916 4.6 -0.249 0.531 -- -- -- -0.485 8.97 -- -- -- --
344.33 0.864 4.55 0.188 -- -1.87 -- -- -0.206 -- 9.506 589 -- --
336.4 0.854 4.54 -- 0.624 -2.02 -- -- -0.219 12.9 12.55 234 -- --
398.35 0.933 4.61 -0.249 -- -- -- -- -0.481 -- -- -- -- --
383.84 0.916 4.59 -- 0.53 -- -- -- -0.457 9 -- -- -- --
345.18 0.865 4.55 -- -- -1.8 -- -- -0.236 -- 9.912 587 -- --
399.99 0.934 4.6 -- -- -- -- -- -0.454 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 321.92 temperature 15.0 90 > th dose dependent rect. 12 23
2 322.35 wind 9.0 43200 > th dose dependent rect. 20 1
5 324.00 temperature 15.0 10 > th dose dependent rect. 12 23
7 325.95 humidity 90.0 14400 > th dose dependent rect. 21 3
8 326.23 temperature 30.0 270 < th dose dependent rect. 7 22
9 326.50 humidity 90.0 14400 > th dose dependent rect. 22 1
12 327.37 humidity 90.0 14400 < th dose independent rect. 21 2
14 327.63 humidity 70.0 4320 < th dose independent rect. 18 1
16 327.72 temperature 30.0 90 < th dose dependent rect. 10 22
17 327.86 humidity 90.0 14400 < th dose independent rect. 10 1
18 327.91 temperature 15.0 1440 > th dose dependent rect. 8 1
20 327.97 humidity 70.0 4320 > th dose independent rect. 18 1
21 328.03 wind 7.0 43200 < th dose independent rect. 20 1
22 328.04 temperature 30.0 1440 < th dose dependent rect. 8 1
23 328.06 wind 7.0 43200 > th dose independent rect. 20 1
35 328.94 humidity 70.0 4320 > th dose independent rect. 18 12
36 328.97 humidity 70.0 4320 > th dose independent rect. 18 5
38 328.97 temperature 15.0 270 > th dose dependent rect. 17 23
41 329.00 humidity 70.0 4320 > th dose independent rect. 18 8
61 329.94 radiation 1.0 4320 > th dose independent rect. 18 16
70 330.27 temperature 15.0 30 > th dose dependent rect. 17 23
71 330.33 radiation 1.0 4320 < th dose independent rect. 18 16
84 330.46 temperature 30.0 270 < th dose dependent rect. 15 21
92 330.89 humidity 60.0 14400 < th dose dependent rect. 17 17
99 331.03 radiation 1.0 4320 > th dose independent rect. 5 6
105 331.16 precipitation 0.1 1440 > th dose dependent rect. 6 20
108 331.22 radiation 1.0 4320 < th dose independent rect. 5 5
127 331.46 wind 1.0 14400 > th dose independent rect. 20 2
128 331.48 precipitation 0.1 1440 > th dose dependent rect. 6 17
143 331.52 radiation 1.0 4320 < th dose independent rect. 24 10
153 331.58 radiation 1.0 4320 < th dose independent rect. 21 13
160 331.60 temperature 15.0 90 > th dose dependent rect. 1 23
180 331.83 humidity 90.0 14400 > th dose independent rect. 21 2
188 332.00 precipitation 0.1 1440 > th dose dependent rect. 9 18
189 332.01 radiation 1.0 4320 > th dose independent sin 9 NA
195 332.11 humidity 90.0 14400 < th dose independent rect. 18 5
196 332.14 radiation 1.0 4320 < th dose independent sin 9 NA
221 332.35 temperature 10.0 270 > th dose dependent no NA NA
252 332.49 temperature 20.0 90 > th dose independent rect. 12 23
258 332.64 temperature 15.0 270 > th dose dependent rect. 4 23
270 332.82 humidity 60.0 14400 < th dose independent rect. 17 16
284 333.05 precipitation 0.1 1440 > th dose dependent rect. 9 13
292 333.11 humidity 80.0 4320 < th dose dependent rect. 18 1
333 333.39 humidity 70.0 4320 < th dose dependent rect. 17 3
336 333.41 humidity 90.0 14400 < th dose independent rect. 18 1
354 333.46 temperature 30.0 270 < th dose dependent rect. 18 23
376 333.75 temperature 10.0 720 > th dose dependent rect. 17 16
402 333.87 temperature 30.0 30 < th dose dependent rect. 23 23
408 333.94 temperature 30.0 270 < th dose dependent no NA NA
412 334.00 temperature 30.0 270 < th dose dependent rect. 20 23
422 334.15 wind 9.0 43200 > th dose dependent rect. 19 3
460 334.51 wind 9.0 14400 > th dose independent rect. 20 14
471 334.57 precipitation 0.1 1440 > th dose independent rect. 7 19
476 334.63 precipitation 0.1 1440 > th dose dependent sin 22 NA
483 334.67 precipitation 0.1 1440 > th dose independent rect. 5 13
499 334.79 humidity 50.0 14400 > th dose independent rect. 17 17
502 334.81 precipitation 0.1 1440 > th dose independent rect. 7 16
503 334.81 precipitation 0.1 1440 > th dose independent rect. 9 18
516 334.91 precipitation 0.1 1440 < th dose independent rect. 9 15
517 334.91 precipitation 0.1 1440 < th dose dependent rect. 9 15
529 334.99 temperature 30.0 270 < th dose dependent rect. 3 23
531 335.03 precipitation 0.1 1440 < th dose independent rect. 7 17
535 335.03 precipitation 0.1 1440 < th dose dependent rect. 7 17
543 335.09 wind 9.0 14400 > th dose dependent rect. 20 15
544 335.10 precipitation 0.1 1440 > th dose independent rect. 15 12
546 335.10 humidity 50.0 14400 < th dose independent rect. 17 18
565 335.16 wind 9.0 14400 < th dose independent rect. 20 14
566 335.16 precipitation 0.1 1440 < th dose independent rect. 9 18
567 335.16 precipitation 0.1 1440 < th dose dependent rect. 9 18
573 335.20 precipitation 0.1 1440 < th dose independent rect. 5 13
574 335.20 precipitation 0.1 1440 > th dose independent rect. 9 14
575 335.20 precipitation 0.1 1440 < th dose dependent rect. 5 13
640 335.52 humidity 90.0 14400 > th dose dependent sin 14 NA
654 335.59 humidity 60.0 4320 > th dose dependent rect. 18 1
692 335.74 precipitation 0.1 1440 < th dose independent rect. 15 12
693 335.74 precipitation 0.1 1440 < th dose dependent rect. 15 12
726 335.87 radiation 1.0 4320 < th dose dependent rect. 4 7
753 335.97 humidity 50.0 4320 > th dose dependent rect. 17 5
762 336.00 radiation 1.0 4320 < th dose dependent rect. 21 14
777 336.04 humidity 60.0 4320 < th dose independent rect. 12 1
833 336.24 humidity 70.0 4320 < th dose independent sin 12 NA
837 336.24 precipitation 0.1 1440 > th dose dependent rect. 16 22
842 336.26 precipitation 0.1 1440 > th dose dependent rect. 12 15
923 336.53 wind 9.0 14400 > th dose independent rect. 20 12
969 336.67 temperature 10.0 1440 > th dose dependent sin 4 NA
973 336.69 precipitation 0.1 1440 > th dose independent sin 18 NA