Os05g0505900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0505900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.09 | 0.668 | 8.84 | 0.0975 | 2.91 | 1.41 | -1.32 | -1.68 | -0.967 | 11.1 | 75.86 | 596 | -- | -- |
| 204.55 | 0.666 | 8.83 | -0.00559 | 2.87 | 1.46 | -2.09 | -- | -0.974 | 10.3 | 71.01 | 980 | -- | -- |
| 207.35 | 0.671 | 8.84 | 0.179 | 2.8 | 1.46 | -- | -2.81 | -0.954 | 10.8 | 73.12 | 774 | -- | -- |
| 221.76 | 0.694 | 8.83 | -0.0739 | 2.92 | 1.48 | -- | -- | -0.982 | 10.3 | 72 | 981 | -- | -- |
| 487.8 | 1.03 | 8.85 | 0.228 | -- | 4.25 | -- | -3.62 | -0.704 | -- | 70.12 | 853 | -- | -- |
| 237.03 | 0.722 | 8.85 | 0.0449 | 3.43 | -- | -1.95 | -- | -1.12 | 10.4 | -- | -- | -- | -- |
| 252.52 | 0.744 | 8.85 | -0.0326 | 3.44 | -- | -- | -- | -1.13 | 10.4 | -- | -- | -- | -- |
| 510.42 | 1.05 | 8.85 | -0.127 | -- | 4.19 | -- | -- | -0.755 | -- | 71 | 853 | -- | -- |
| 221.9 | 0.694 | 8.83 | -- | 2.92 | 1.47 | -- | -- | -0.974 | 10.4 | 72 | 981 | -- | -- |
| 976.2 | 1.46 | 8.94 | -0.0893 | -- | -- | -- | -- | -1.14 | -- | -- | -- | -- | -- |
| 252.55 | 0.743 | 8.85 | -- | 3.44 | -- | -- | -- | -1.12 | 10.4 | -- | -- | -- | -- |
| 510.84 | 1.05 | 8.85 | -- | -- | 4.19 | -- | -- | -0.74 | -- | 71 | 854 | -- | -- |
| 976.41 | 1.46 | 8.94 | -- | -- | -- | -- | -- | -1.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.37 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 16 | 200.42 | humidity | 80 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 19 | 200.73 | humidity | 70 | 720 | > th | dose dependent | sin | 16 | NA |
| 20 | 200.74 | humidity | 80 | 720 | > th | dose dependent | sin | 19 | NA |
| 36 | 201.06 | humidity | 80 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 44 | 201.38 | humidity | 80 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 46 | 201.44 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 108 | 202.44 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 6 |
| 117 | 202.54 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 12 |
| 154 | 203.07 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 199 | 203.57 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 203 | 203.60 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 204 | 203.61 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 18 |
| 216 | 203.70 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 16 |
| 232 | 203.77 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 263 | 204.03 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 289 | 204.16 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 290 | 204.17 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 295 | 204.20 | humidity | 70 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 306 | 204.30 | humidity | 70 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 315 | 204.38 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 20 |
| 318 | 204.41 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 319 | 204.41 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 340 | 204.53 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 344 | 204.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 355 | 204.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 375 | 204.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 384 | 204.74 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 401 | 204.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 431 | 204.93 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 6 |
| 434 | 204.93 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 20 |
| 456 | 205.01 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 457 | 205.01 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 8 |
| 460 | 205.02 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 1 |
| 463 | 205.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 464 | 205.03 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 480 | 205.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 526 | 205.15 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 18 |
| 568 | 205.28 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 14 |
| 611 | 205.38 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 671 | 205.58 | humidity | 80 | 720 | > th | dose independent | sin | 18 | NA |
| 793 | 205.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 797 | 205.92 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 949 | 206.29 | humidity | 80 | 720 | < th | dose independent | sin | 17 | NA |