Os05g0502500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0502500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.01 | 0.42 | 12.5 | 1 | 2.17 | -1.1 | 0.372 | 0.822 | 0.239 | 9.03 | 11.58 | 4004 | -- | -- |
| 80.43 | 0.418 | 12.5 | 0.965 | 2.17 | -1.14 | 0.263 | -- | 0.326 | 9.17 | 12.09 | 11221 | -- | -- |
| 80.05 | 0.417 | 12.5 | 1.02 | 2.17 | -1.07 | -- | 1.05 | 0.258 | 9 | 11.18 | 2674 | -- | -- |
| 80.46 | 0.418 | 12.5 | 1.08 | 2.2 | -1.19 | -- | -- | 0.359 | 9.09 | 9.596 | 11242 | -- | -- |
| 266.11 | 0.76 | 12.5 | 1.57 | -- | -2.85 | -- | 2.57 | 0.59 | -- | -21.15 | 693 | -- | -- |
| 103.38 | 0.477 | 12.6 | 0.311 | 2.21 | -- | 0.372 | -- | -0.0318 | 9.16 | -- | -- | -- | -- |
| 103.87 | 0.477 | 12.6 | 0.324 | 2.21 | -- | -- | -- | -0.0313 | 9.17 | -- | -- | -- | -- |
| 260.99 | 0.752 | 12.6 | 1.01 | -- | -2.84 | -- | -- | 0.406 | -- | -52.36 | 679 | -- | -- |
| 93.22 | 0.45 | 12.6 | -- | 2.21 | -0.635 | -- | -- | 0.0448 | 9 | 18.82 | 2666 | -- | -- |
| 386.25 | 0.918 | 12.7 | 0.317 | -- | -- | -- | -- | -0.0201 | -- | -- | -- | -- | -- |
| 106.64 | 0.483 | 12.6 | -- | 2.21 | -- | -- | -- | -0.0675 | 9.16 | -- | -- | -- | -- |
| 266.19 | 0.76 | 12.6 | -- | -- | -2.14 | -- | -- | 0.186 | -- | 24.2 | 687 | -- | -- |
| 388.9 | 0.92 | 12.7 | -- | -- | -- | -- | -- | -0.0553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 76.12 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 6 | 76.38 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 9 | 76.50 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 11 | 76.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 24 | 76.66 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 26 | 76.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 27 | 76.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 34 | 76.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 37 | 76.75 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 51 | 76.90 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 53 | 76.92 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 6 |
| 58 | 76.98 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 72 | 77.10 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 4 |
| 75 | 77.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 89 | 77.26 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 112 | 77.38 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 18 |
| 116 | 77.40 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 121 | 77.42 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 142 | 77.49 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 166 | 77.56 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 167 | 77.57 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 175 | 77.61 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 183 | 77.65 | humidity | 80 | 14400 | > th | dose dependent | sin | 12 | NA |
| 184 | 77.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 196 | 77.71 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 262 | 77.92 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 315 | 78.12 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 14 |
| 323 | 78.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 21 |
| 335 | 78.18 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 386 | 78.33 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 391 | 78.35 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 400 | 78.38 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 454 | 78.52 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 472 | 78.53 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 484 | 78.56 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 513 | 78.63 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 514 | 78.63 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 529 | 78.66 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 531 | 78.66 | humidity | 80 | 14400 | > th | dose dependent | no | NA | NA |
| 553 | 78.68 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 557 | 78.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 582 | 78.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 21 |
| 584 | 78.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 594 | 78.73 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 602 | 78.74 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 628 | 78.80 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 636 | 78.81 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 659 | 78.82 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 662 | 78.82 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 10 |
| 664 | 78.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 16 |
| 692 | 78.86 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 18 |
| 705 | 78.88 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 721 | 78.90 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 754 | 78.94 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 771 | 78.97 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 792 | 78.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 861 | 79.09 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 862 | 79.09 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 918 | 79.13 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 23 |