Os05g0501400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like protein kinase 5.
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Os05g0501400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like protein kinase 5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.88 | 0.7 | 7.24 | 1.43 | 0.937 | -2.27 | -0.768 | -1.03 | 1.3 | 20.2 | 0.08375 | 75 | -- | -- |
| 223.69 | 0.697 | 7.24 | 1.43 | 0.939 | -2.24 | -0.381 | -- | 1.31 | 20.2 | -1.821 | 75 | -- | -- |
| 223.25 | 0.696 | 7.24 | 1.44 | 0.938 | -2.25 | -- | -0.593 | 1.3 | 20.2 | -1.637 | 75 | -- | -- |
| 224.01 | 0.697 | 7.24 | 1.43 | 0.945 | -2.22 | -- | -- | 1.3 | 20.3 | -2.036 | 75 | -- | -- |
| 263.87 | 0.757 | 7.22 | 1.42 | -- | -2.73 | -- | -0.634 | 1.3 | -- | -0.4969 | 69 | -- | -- |
| 281.98 | 0.787 | 7.28 | 1.42 | 1.87 | -- | -0.0338 | -- | 1.21 | 22.8 | -- | -- | -- | -- |
| 281.98 | 0.786 | 7.28 | 1.43 | 1.87 | -- | -- | -- | 1.21 | 22.8 | -- | -- | -- | -- |
| 263.22 | 0.756 | 7.22 | 1.41 | -- | -2.72 | -- | -- | 1.27 | -- | -7.478 | 46 | -- | -- |
| 278.01 | 0.777 | 7.27 | -- | 0.914 | -2.26 | -- | -- | 1.17 | 20.2 | -2.828 | 74 | -- | -- |
| 497.43 | 1.04 | 7.23 | 1.46 | -- | -- | -- | -- | 1.22 | -- | -- | -- | -- | -- |
| 335.6 | 0.857 | 7.32 | -- | 1.88 | -- | -- | -- | 1.05 | 22.8 | -- | -- | -- | -- |
| 315.72 | 0.828 | 7.26 | -- | -- | -2.74 | -- | -- | 1.12 | -- | -5.36 | 46 | -- | -- |
| 553.99 | 1.1 | 7.27 | -- | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.35 | radiation | 20 | 90 | < th | dose dependent | sin | 23 | NA |
| 5 | 221.01 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 6 | 221.36 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 7 | 221.55 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 22 | 222.40 | radiation | 1 | 90 | > th | dose dependent | sin | 23 | NA |
| 28 | 222.86 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 49 | 222.94 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 96 | 223.19 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 109 | 223.30 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 3 | 15 |
| 114 | 223.40 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 127 | 223.62 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 143 | 224.08 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 144 | 224.17 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 159 | 224.96 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 173 | 225.13 | radiation | 10 | 90 | > th | dose independent | sin | 23 | NA |
| 176 | 225.25 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 180 | 225.66 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 188 | 226.01 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 190 | 226.07 | radiation | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 191 | 226.12 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 14 |
| 195 | 226.24 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 200 | 226.41 | radiation | 10 | 90 | < th | dose independent | sin | 23 | NA |
| 217 | 226.62 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 221 | 226.72 | temperature | 30 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 231 | 227.07 | wind | 3 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 235 | 227.20 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 237 | 227.25 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 248 | 227.70 | radiation | 10 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 258 | 228.08 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 288 | 228.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 389 | 228.44 | wind | 9 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 392 | 228.49 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 397 | 228.58 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 400 | 228.65 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 4 | 16 |
| 407 | 228.91 | radiation | 40 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 410 | 228.93 | wind | 5 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 420 | 229.21 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 453 | 229.44 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 10 |
| 500 | 229.60 | radiation | 40 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 515 | 229.63 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 557 | 229.98 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 561 | 230.06 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 20 |
| 589 | 230.23 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 600 | 230.37 | radiation | 10 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 627 | 230.64 | radiation | 20 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 632 | 230.66 | radiation | 1 | 270 | > th | dose dependent | sin | 4 | NA |
| 741 | 230.81 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 14 | 18 |
| 758 | 230.88 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 15 |
| 766 | 231.02 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 14 |
| 792 | 231.17 | radiation | 20 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 797 | 231.26 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 798 | 231.26 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 814 | 231.29 | radiation | 40 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 819 | 231.37 | radiation | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 821 | 231.39 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 14 |
| 856 | 231.79 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 889 | 232.11 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 22 |
| 942 | 232.27 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 23 |