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Os05g0500600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAS transcription factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.57 (0.0712) R2 : 0.761
β1 : -6.72 (0.315) R2dD : 0.612 R2D : 0.197
β2 : 2.04 (0.135) R2dC : 0.12 R2C : 0.14
β3 : 2.99 (0.39) R2dE : 0.0887 R2E : -0.398
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13.3 (0.998) R2dD*E : 0.174 R2D*E : 0.168
γ1 : -2.4 (0.143) R2dN8 : 0.298 R2N8 : 0.116
σ : 1.02
deviance : 482.24
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_____
C
peak time of C : 14.8
E
wheather : radiation
threshold : 46.96
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
478.18 1.03 7.57 -6.72 2.04 2.96 1.09 13.3 -2.4 14.8 46.63 4320 18 8
588.46 1.13 8.14 -6.13 1.83 2.38 1.39 -- -2.08 15.9 37.36 47520 18.5 7.32
482.24 1.02 7.57 -6.72 2.04 2.99 -- 13.3 -2.4 14.8 46.96 4320 18 8
516.24 1.06 7.93 -4.97 2.21 2.83 -- -- -2.02 14.6 30.78 47520 18.8 7.2
718.65 1.25 7.54 -6.97 -- 3.22 -- 14.1 -2.46 -- 32.81 4320 18 7.82
666.09 1.21 8.09 -5.24 2.17 -- 1.34 -- -2.59 15.8 -- -- -- --
671.12 1.21 8.08 -5.22 2.17 -- -- -- -2.58 15.6 -- -- -- --
748.94 1.27 7.89 -4.36 -- 2.65 -- -- -1.69 -- 0.7271 47520 18.9 5.19
677.59 1.21 7.96 -- 2 4.32 -- -- -1.83 14.5 0.6084 47520 19 6.58
931.99 1.43 8.08 -5.31 -- -- -- -- -2.64 -- -- -- -- --
1388.93 1.74 7.95 -- 2.27 -- -- -- -2 15.6 -- -- -- --
901.27 1.4 7.89 -- -- 4.87 -- -- -1.51 -- 0.161 47520 18.9 5.48
1675.57 1.91 7.95 -- -- -- -- -- -2.05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 475.77 humidity 90.0 14400 > th dose dependent rect. 1 1
2 476.33 humidity 80.0 43200 < th dose independent rect. 13 5
5 477.36 humidity 80.0 43200 > th dose independent rect. 13 6
9 478.25 humidity 80.0 43200 < th dose independent rect. 10 9
11 478.42 humidity 80.0 43200 > th dose independent rect. 10 9
13 478.55 humidity 60.0 43200 > th dose independent rect. 14 1
16 478.77 humidity 60.0 43200 < th dose independent rect. 14 1
24 479.15 humidity 80.0 43200 < th dose independent rect. 15 2
29 479.39 radiation 40.0 4320 < th dose dependent rect. 18 8
32 479.51 humidity 60.0 43200 < th dose independent rect. 13 3
33 479.94 humidity 60.0 43200 > th dose independent rect. 13 4
36 480.06 humidity 90.0 43200 < th dose independent rect. 22 2
37 480.22 radiation 20.0 14400 > th dose dependent rect. 16 16
46 480.75 radiation 40.0 14400 < th dose dependent rect. 18 13
47 480.78 humidity 80.0 43200 > th dose independent rect. 10 1
49 480.80 humidity 80.0 43200 > th dose dependent rect. 9 15
51 480.82 humidity 70.0 43200 > th dose dependent rect. 13 1
58 481.06 radiation 20.0 14400 < th dose independent rect. 16 17
63 481.31 humidity 80.0 43200 > th dose independent rect. 16 1
65 481.44 humidity 70.0 43200 < th dose independent rect. 17 1
67 481.48 humidity 90.0 43200 < th dose independent rect. 13 12
69 481.50 radiation 40.0 14400 < th dose independent rect. 14 18
73 481.59 humidity 90.0 43200 < th dose independent rect. 11 15
77 481.64 humidity 90.0 43200 < th dose independent rect. 6 20
78 481.64 humidity 80.0 43200 > th dose dependent sin 19 NA
79 481.66 humidity 90.0 43200 > th dose independent rect. 11 15
86 481.81 humidity 90.0 43200 < th dose independent rect. 19 5
88 481.81 humidity 90.0 43200 < th dose independent rect. 9 17
93 481.89 radiation 1.0 14400 > th dose dependent rect. 17 14
105 482.01 humidity 90.0 43200 > th dose independent rect. 13 13
107 482.02 humidity 80.0 43200 > th dose dependent rect. 18 2
108 482.04 humidity 80.0 43200 < th dose independent rect. 13 1
126 482.26 humidity 80.0 43200 > th dose dependent rect. 14 10
136 482.35 humidity 90.0 43200 > th dose independent rect. 6 20
143 482.39 humidity 90.0 43200 > th dose independent rect. 19 2
156 482.50 humidity 70.0 43200 > th dose dependent rect. 13 4
159 482.54 radiation 20.0 14400 < th dose independent rect. 7 1
178 482.71 humidity 90.0 43200 > th dose independent rect. 19 7
196 482.84 radiation 1.0 14400 > th dose dependent rect. 4 3
211 482.90 humidity 80.0 43200 > th dose dependent rect. 13 7
244 483.15 radiation 30.0 14400 < th dose dependent rect. 4 3
257 483.23 humidity 80.0 43200 > th dose dependent rect. 16 4
268 483.27 humidity 90.0 43200 < th dose independent sin 18 NA
271 483.29 precipitation 0.1 43200 > th dose dependent rect. 16 1
281 483.36 radiation 1.0 14400 < th dose dependent rect. 19 20
307 483.50 radiation 1.0 14400 < th dose dependent rect. 22 17
312 483.51 radiation 30.0 14400 > th dose dependent rect. 14 18
313 483.52 radiation 40.0 14400 < th dose independent rect. 14 1
323 483.59 precipitation 0.1 43200 < th dose independent rect. 16 1
325 483.59 precipitation 0.1 43200 < th dose dependent rect. 16 1
331 483.66 precipitation 0.1 43200 > th dose independent rect. 16 1
336 483.68 radiation 40.0 14400 < th dose independent rect. 14 12
359 483.80 radiation 10.0 14400 < th dose independent rect. 18 14
361 483.82 radiation 40.0 14400 < th dose independent rect. 14 16
384 483.98 radiation 40.0 14400 < th dose independent rect. 14 7
402 484.08 radiation 10.0 14400 < th dose independent rect. 22 10
411 484.11 radiation 10.0 14400 < th dose independent rect. 24 8
415 484.14 radiation 10.0 14400 < th dose independent rect. 5 3
430 484.22 radiation 10.0 43200 > th dose independent rect. 5 1
464 484.42 humidity 90.0 43200 > th dose independent sin 18 NA
510 484.75 radiation 1.0 14400 < th dose dependent rect. 5 10
511 484.77 humidity 90.0 43200 > th dose independent rect. 22 3
512 484.77 radiation 1.0 14400 < th dose dependent rect. 3 12
536 484.98 humidity 80.0 43200 > th dose dependent rect. 5 15
554 485.10 radiation 1.0 14400 < th dose dependent sin 3 NA
562 485.13 humidity 80.0 43200 > th dose dependent rect. 9 2
607 485.42 humidity 90.0 43200 < th dose independent rect. 19 2
610 485.44 radiation 20.0 14400 > th dose independent rect. 16 16
646 485.57 radiation 30.0 14400 < th dose independent sin 12 NA
650 485.58 radiation 40.0 14400 > th dose dependent rect. 14 20
658 485.62 humidity 80.0 43200 < th dose independent rect. 10 1
717 485.95 radiation 1.0 14400 < th dose dependent rect. 7 23
768 486.21 radiation 1.0 43200 < th dose dependent rect. 16 14
787 486.31 radiation 1.0 43200 < th dose independent rect. 17 9
791 486.32 radiation 1.0 43200 < th dose independent rect. 17 4
827 486.46 radiation 1.0 14400 < th dose dependent rect. 5 21
850 486.52 radiation 1.0 14400 < th dose dependent rect. 23 22
855 486.54 radiation 1.0 14400 < th dose dependent no NA NA
864 486.56 humidity 90.0 43200 < th dose independent rect. 13 23
870 486.59 humidity 90.0 43200 < th dose independent rect. 18 23
874 486.60 humidity 90.0 43200 > th dose independent rect. 24 1
884 486.61 humidity 90.0 43200 < th dose independent rect. 22 23
894 486.64 radiation 1.0 14400 < th dose dependent rect. 13 23
900 486.67 humidity 90.0 43200 < th dose independent no NA NA
904 486.68 humidity 90.0 43200 > th dose independent rect. 13 23
922 486.73 humidity 90.0 43200 > th dose independent rect. 19 23
925 486.73 radiation 1.0 14400 < th dose dependent rect. 10 23
949 486.81 radiation 1.0 43200 < th dose dependent rect. 18 8
953 486.83 humidity 90.0 43200 > th dose independent rect. 22 23
963 486.86 humidity 90.0 43200 < th dose independent rect. 11 23
967 486.87 radiation 1.0 43200 < th dose dependent rect. 16 10
972 486.89 humidity 90.0 43200 > th dose independent no NA NA
977 486.90 radiation 1.0 14400 < th dose dependent rect. 7 19
981 486.91 humidity 90.0 43200 > th dose independent rect. 11 23
986 486.92 humidity 80.0 43200 > th dose dependent rect. 8 7
996 486.97 humidity 90.0 43200 > th dose independent rect. 9 23