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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0500200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.93 (0.0529) R2 : 0.41
β1 : -1.64 (0.187) R2dD : 0.126 R2D : 0.116
β2 : 1.24 (0.112) R2dC : 0.159 R2C : 0.154
β3 : 0.0538 (0.217) R2dE : 0.000112 R2E : -0.0205
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.31 (0.995) R2dD*E : 0.127 R2D*E : 0.124
γ1 : -0.208 (0.11) R2dN8 : 0.00748 R2N8 : -0.0319
σ : 0.873
deviance : 351.38
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_____
C
peak time of C : 13.2
E
wheather : wind
threshold : 0.7998
memory length : 4025
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.97
open length of G : 2.06

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
350.83 0.88 4.93 -1.64 1.24 0.0536 -0.363 8.34 -0.208 13.2 0.8 4026 4.97 2.06
398.8 0.93 5.11 -1.72 1.31 -0.43 -0.258 -- -0.238 12.8 7.72 4334 4.97 5.05
351.38 0.873 4.93 -1.64 1.24 0.0538 -- 8.31 -0.208 13.2 0.7998 4025 4.97 2.06
397.4 0.928 5.11 -1.72 1.31 -0.432 -- -- -0.238 12.8 8.099 4327 4.97 5.05
435.94 0.972 4.91 -1.78 -- 0.222 -- 8.47 -0.156 -- 0.674 3424 4.97 2.12
409.23 0.948 5.14 -1.77 1.25 -- -0.109 -- -0.301 13.2 -- -- -- --
409.28 0.947 5.14 -1.78 1.25 -- -- -- -0.302 13.2 -- -- -- --
438.16 0.975 5.02 -1.29 -- 0.863 -- -- -0.0635 -- 8.069 2198 4.8 2.36
424.11 0.959 5.05 -- 1.22 -1.28 -- -- 0.11 12.6 17.5 47520 4.02 6.23
506.34 1.05 5.16 -1.83 -- -- -- -- -0.327 -- -- -- -- --
492.64 1.04 5.1 -- 1.28 -- -- -- -0.103 13.2 -- -- -- --
476.89 1.02 5.16 -- -- 1.14 -- -- -0.115 -- 10.4 1970 6.89 4.23
594.33 1.14 5.11 -- -- -- -- -- -0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 347.50 wind 7 43200 > th dose independent rect. 18 2
2 349.41 wind 7 43200 < th dose independent rect. 18 2
3 349.52 humidity 90 14400 < th dose independent rect. 3 1
4 351.38 wind 7 43200 > th dose dependent rect. 17 2
8 353.12 humidity 90 14400 > th dose dependent rect. 3 1
34 356.52 wind 9 43200 > th dose independent rect. 15 7
35 356.55 wind 1 4320 < th dose dependent rect. 5 2
49 357.16 wind 7 43200 < th dose independent rect. 16 7
63 357.48 wind 7 43200 > th dose independent rect. 15 13
70 357.60 wind 7 43200 < th dose independent rect. 15 13
87 357.90 humidity 90 14400 > th dose independent rect. 3 1
140 359.19 radiation 1 43200 < th dose dependent rect. 24 4
171 359.65 wind 1 43200 < th dose dependent rect. 8 1
212 360.45 radiation 1 43200 < th dose dependent rect. 24 2
246 360.94 wind 7 43200 < th dose independent sin 15 NA
247 360.95 wind 7 43200 > th dose independent sin 15 NA
283 361.36 wind 9 14400 < th dose independent rect. 18 9
287 361.40 wind 7 14400 > th dose dependent rect. 20 2
294 361.49 wind 1 43200 > th dose independent rect. 8 1
310 361.76 wind 7 14400 > th dose independent rect. 20 2
312 361.80 wind 7 14400 < th dose independent rect. 20 2
335 362.01 wind 9 14400 > th dose independent rect. 20 4
349 362.18 wind 1 4320 < th dose independent rect. 5 2
354 362.21 wind 7 43200 > th dose dependent sin 15 NA
386 362.55 wind 1 4320 < th dose independent rect. 1 6
393 362.62 humidity 50 14400 > th dose dependent rect. 2 2
407 362.75 wind 9 14400 < th dose independent rect. 20 7
459 363.04 wind 9 14400 > th dose independent rect. 20 6
472 363.11 wind 9 14400 < th dose independent rect. 20 4
476 363.13 wind 1 4320 < th dose dependent rect. 1 6
485 363.18 atmosphere 1005 14400 > th dose independent rect. 9 1
515 363.41 wind 9 14400 > th dose dependent rect. 20 4
529 363.50 wind 1 14400 < th dose independent rect. 24 3
561 363.73 atmosphere 1005 14400 < th dose independent rect. 8 2
566 363.75 humidity 50 10 > th dose dependent rect. 6 17
567 363.76 wind 1 14400 < th dose dependent rect. 24 4
614 364.04 wind 1 4320 > th dose independent rect. 1 6
684 364.39 wind 1 14400 > th dose independent rect. 24 3
738 364.58 radiation 20 43200 > th dose independent rect. 7 1
806 364.83 atmosphere 995 14400 > th dose independent rect. 7 6
836 364.96 wind 1 4320 > th dose independent rect. 5 2
837 364.96 radiation 10 1440 < th dose independent rect. 15 2
911 365.30 radiation 20 43200 < th dose dependent rect. 7 1
968 365.60 wind 1 14400 > th dose independent rect. 24 1
982 365.63 atmosphere 1010 14400 < th dose dependent rect. 9 1