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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0500100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.66 (0.0506) R2 : 0.412
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.33 (0.139) R2dE : 0.449 R2E : 0.0804
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.47 (0.115) R2dN8 : 0.332 R2N8 : -0.0368
σ : 0.926
deviance : 395.57
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.5
memory length : 47520
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
381.51 0.918 4.93 -2.32 0.503 -1.37 -0.391 -1.4 0.366 13.7 24.8 4152 -- --
382.23 0.911 4.89 -1.99 0.465 -1.51 -0.347 -- 0.426 13.7 24.8 4110 -- --
382.09 0.91 4.93 -2.32 0.507 -1.37 -- -1.34 0.366 13.5 24.8 4169 -- --
382.63 0.911 4.89 -2 0.498 -1.5 -- -- 0.433 13.6 24.9 4151 -- --
396.44 0.927 4.93 -2.25 -- -1.51 -- -1.14 0.387 -- 24.6 4039 -- --
448.34 0.993 4.91 -2.48 0.649 -- -0.176 -- 0.364 13.6 -- -- -- --
448.46 0.992 4.91 -2.49 0.649 -- -- -- 0.363 13.5 -- -- -- --
396.71 0.928 4.89 -1.98 -- -1.62 -- -- 0.445 -- 24.66 4029 -- --
460.52 0.999 4.73 -- 0.575 -2.33 -- -- 1.04 13.4 16.6 4345 -- --
474.25 1.02 4.92 -2.52 -- -- -- -- 0.349 -- -- -- -- --
611.79 1.16 4.84 -- 0.693 -- -- -- 0.64 13.6 -- -- -- --
395.57 0.926 4.66 -- -- -2.33 -- -- 1.47 -- 19.5 47520 -- --
641.14 1.18 4.85 -- -- -- -- -- 0.628 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 368.50 precipitation 0.1 43200 < th dose independent rect. 5 4
2 368.50 precipitation 0.1 43200 < th dose dependent rect. 5 4
3 368.55 precipitation 0.1 43200 < th dose independent rect. 4 6
4 368.55 precipitation 0.1 43200 < th dose dependent rect. 4 6
7 368.83 precipitation 0.1 43200 > th dose dependent rect. 4 6
8 368.86 precipitation 0.1 43200 > th dose independent rect. 4 6
10 368.91 precipitation 0.1 43200 < th dose independent rect. 7 1
11 368.91 precipitation 0.1 43200 < th dose dependent rect. 7 1
25 370.27 temperature 25.0 43200 > th dose independent rect. 23 1
26 370.29 temperature 25.0 43200 > th dose independent rect. 18 8
27 370.33 temperature 25.0 43200 < th dose independent rect. 23 1
33 370.41 temperature 25.0 43200 < th dose independent rect. 22 4
34 370.41 temperature 25.0 43200 > th dose independent rect. 18 11
37 370.43 temperature 25.0 43200 > th dose independent rect. 22 4
40 370.47 temperature 25.0 43200 < th dose independent rect. 18 11
42 370.48 temperature 25.0 43200 < th dose independent rect. 18 8
73 370.76 precipitation 0.1 43200 > th dose independent rect. 7 1
81 370.79 temperature 25.0 43200 > th dose independent rect. 18 2
97 370.86 precipitation 0.1 43200 > th dose dependent rect. 7 1
115 370.99 temperature 25.0 43200 < th dose independent rect. 18 2
132 371.10 temperature 25.0 43200 > th dose independent sin 12 NA
135 371.11 temperature 25.0 43200 < th dose independent sin 12 NA
142 371.12 precipitation 0.1 43200 > th dose dependent rect. 4 10
313 371.74 temperature 25.0 43200 > th dose independent rect. 18 21
318 371.75 temperature 25.0 43200 < th dose independent rect. 18 21
382 371.88 precipitation 0.1 43200 > th dose independent rect. 3 11
406 371.91 precipitation 0.1 43200 < th dose independent rect. 3 11
410 371.91 precipitation 0.1 43200 < th dose dependent rect. 3 11
412 371.93 temperature 30.0 43200 > th dose independent rect. 13 2
451 372.00 temperature 30.0 43200 < th dose independent rect. 13 2
463 372.01 temperature 25.0 43200 < th dose independent rect. 3 23
468 372.03 temperature 25.0 43200 < th dose independent no NA NA
476 372.04 temperature 25.0 43200 > th dose independent no NA NA
482 372.04 temperature 25.0 43200 < th dose independent rect. 7 23
487 372.05 temperature 25.0 43200 > th dose independent rect. 3 23
498 372.06 temperature 25.0 43200 > th dose independent rect. 6 23
521 372.09 temperature 25.0 43200 < th dose independent rect. 1 23
528 372.10 temperature 25.0 43200 > th dose independent rect. 24 23
625 372.24 temperature 25.0 43200 > th dose dependent rect. 18 1
652 372.29 precipitation 0.1 43200 > th dose dependent sin 3 NA
728 372.47 temperature 25.0 43200 < th dose independent rect. 7 1
736 372.49 temperature 25.0 43200 > th dose independent rect. 7 1
817 372.72 temperature 25.0 43200 < th dose independent rect. 4 4
880 372.91 temperature 25.0 43200 > th dose independent rect. 4 5
883 372.91 precipitation 0.1 43200 > th dose independent rect. 3 15
896 372.93 precipitation 0.1 43200 < th dose independent rect. 3 15
898 372.93 precipitation 0.1 43200 < th dose dependent rect. 3 15