Os05g0499400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
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Os05g0499400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.35 | 0.724 | 10.1 | -3.21 | 5.73 | -4.23 | 2.48 | 0.0944 | -0.69 | 7.35 | 71.53 | 945 | 7.91 | -- |
| 237.27 | 0.717 | 10.1 | -3.19 | 5.78 | -4.27 | 2.44 | -- | -0.675 | 7.38 | 72 | 945 | 7.81 | -- |
| 239.64 | 0.721 | 10.1 | -3.28 | 5.9 | -4.39 | -- | 3.53 | -0.702 | 7.45 | 71.52 | 948 | 7.64 | -- |
| 254.57 | 0.743 | 10.1 | -3.16 | 5.95 | -4.46 | -- | -- | -0.688 | 7.42 | 71 | 945 | 7.66 | -- |
| 358.9 | 0.887 | 10.2 | -3.03 | -- | -2.92 | -- | -2.08 | -0.654 | -- | 48 | 1525 | 9.69 | -- |
| 325.58 | 0.846 | 10.2 | -3.05 | 3.07 | -- | 2.64 | -- | -0.678 | 7.65 | -- | -- | -- | -- |
| 345.26 | 0.87 | 10.2 | -2.99 | 3.07 | -- | -- | -- | -0.682 | 7.67 | -- | -- | -- | -- |
| 345.34 | 0.866 | 10.3 | -2.95 | -- | -3.07 | -- | -- | -0.692 | -- | 26.39 | 134 | 11.5 | -- |
| 513.92 | 1.06 | 10 | -- | 5.88 | -4.27 | -- | -- | -0.31 | 7.35 | 72 | 914 | 7.59 | -- |
| 853.37 | 1.37 | 10.2 | -2.95 | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
| 580.7 | 1.13 | 10.1 | -- | 3.05 | -- | -- | -- | -0.349 | 7.74 | -- | -- | -- | -- |
| 580.7 | 1.12 | 10.2 | -- | -- | -3.04 | -- | -- | -0.349 | -- | 25.01 | 130 | 11.3 | -- |
| 1082.57 | 1.54 | 10.2 | -- | -- | -- | -- | -- | -0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 242.51 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 10 |
| 9 | 249.68 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 20 | 249.70 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 22 | 249.76 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 32 | 250.80 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 54 | 252.00 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 62 | 253.11 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 69 | 254.12 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 76 | 255.11 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 117 | 257.21 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 139 | 257.54 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 173 | 259.58 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 3 |
| 266 | 261.46 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 269 | 261.57 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 17 |
| 270 | 261.58 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 294 | 262.00 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 321 | 262.05 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 334 | 262.11 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 482 | 263.41 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 601 | 264.11 | radiation | 30 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 774 | 264.94 | radiation | 10 | 1440 | > th | dose independent | sin | 13 | NA |
| 896 | 265.49 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 911 | 265.52 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |