Os05g0499300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase (EC 1.11.1.7).
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Os05g0499300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase (EC 1.11.1.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.07 | 0.326 | 3.03 | 0.00102 | 0.139 | 1.02 | -0.449 | 2.46 | 0.0333 | 4.69 | 9.024 | 10 | -- | -- |
| 50.09 | 0.332 | 3.02 | -0.0369 | 0.127 | 1.06 | -0.494 | -- | 0.0255 | 4.68 | 8.573 | 9 | -- | -- |
| 48.26 | 0.324 | 3.03 | -0.0337 | 0.128 | 1.14 | -- | 2.78 | 0.0298 | 4.93 | 9.006 | 5 | -- | -- |
| 50.66 | 0.334 | 3.02 | -0.0347 | 0.13 | 0.983 | -- | -- | 0.0279 | 5.62 | 8.577 | 9 | -- | -- |
| 49.11 | 0.326 | 3.03 | -0.0301 | -- | 1.1 | -- | 2.78 | 0.0325 | -- | 9.037 | 5 | -- | -- |
| 51.17 | 0.335 | 3.02 | -0.0516 | 0.116 | -- | -0.435 | -- | 0.0215 | 4.52 | -- | -- | -- | -- |
| 51.62 | 0.336 | 3.02 | -0.0481 | 0.12 | -- | -- | -- | 0.0238 | 5.58 | -- | -- | -- | -- |
| 51.53 | 0.336 | 3.02 | -0.0314 | -- | 0.918 | -- | -- | 0.0307 | -- | 8.552 | 9 | -- | -- |
| 50.69 | 0.333 | 3.02 | -- | 0.129 | 0.996 | -- | -- | 0.0318 | 5.63 | 8.577 | 9 | -- | -- |
| 52.36 | 0.338 | 3.02 | -0.0442 | -- | -- | -- | -- | 0.0267 | -- | -- | -- | -- | -- |
| 51.68 | 0.336 | 3.02 | -- | 0.119 | -- | -- | -- | 0.0292 | 5.59 | -- | -- | -- | -- |
| 51.55 | 0.336 | 3.02 | -- | -- | 0.93 | -- | -- | 0.0342 | -- | 8.552 | 9 | -- | -- |
| 52.42 | 0.338 | 3.02 | -- | -- | -- | -- | -- | 0.0316 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.61 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 4 | 44.05 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 5 | 44.11 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 7 | 44.11 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 8 | 44.12 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 15 | 44.14 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 18 | 44.14 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 21 | 44.14 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 22 | 44.14 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 24 | 44.14 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 29 | 44.14 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 30 | 44.14 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 31 | 44.14 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 34 | 44.14 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 39 | 44.14 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 40 | 44.15 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 46 | 44.19 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 48 | 44.22 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 51 | 44.24 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 70 | 44.73 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 102 | 44.93 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 107 | 45.13 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 130 | 45.13 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 173 | 45.89 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 183 | 45.89 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 223 | 46.23 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 4 |
| 242 | 46.66 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 264 | 47.12 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 265 | 47.12 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 267 | 47.13 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 268 | 47.13 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 292 | 47.23 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 303 | 47.24 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 313 | 47.30 | wind | 5.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 314 | 47.30 | wind | 5.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 324 | 47.38 | wind | 9.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 326 | 47.38 | wind | 9.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 367 | 47.48 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 369 | 47.49 | wind | 5.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 379 | 47.51 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 410 | 47.68 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 425 | 47.73 | wind | 5.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 432 | 47.75 | wind | 9.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 438 | 47.75 | wind | 9.0 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 477 | 47.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 479 | 47.85 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 495 | 47.85 | wind | 5.0 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 521 | 47.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 3 |
| 525 | 47.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 539 | 47.89 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 544 | 47.89 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 628 | 47.96 | wind | 9.0 | 90 | > th | dose independent | sin | 7 | NA |
| 631 | 47.96 | wind | 9.0 | 10 | > th | dose independent | rect. | 11 | 8 |
| 717 | 48.01 | wind | 9.0 | 90 | < th | dose independent | sin | 8 | NA |
| 732 | 48.02 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 808 | 48.06 | wind | 5.0 | 10 | > th | dose independent | rect. | 24 | 12 |
| 844 | 48.08 | wind | 7.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 939 | 48.13 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 18 |