Os05g0498900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0498900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 203.85 | 0.671 | 8.75 | 2.85 | 4.09 | -1.77 | -0.635 | 0.981 | 0.42 | 5.89 | 20.51 | 1353 | -- | -- |
| 205.75 | 0.668 | 8.78 | 2.67 | 4.09 | -1.89 | -0.587 | -- | 0.382 | 5.89 | 20.52 | 1351 | -- | -- |
| 204.82 | 0.667 | 8.75 | 2.83 | 4.09 | -1.76 | -- | 0.945 | 0.419 | 5.9 | 20.5 | 1353 | -- | -- |
| 206.58 | 0.669 | 8.78 | 2.66 | 4.08 | -1.88 | -- | -- | 0.382 | 5.9 | 20.5 | 1353 | -- | -- |
| 577.14 | 1.12 | 8.62 | 4.21 | -- | -2.93 | -- | 3.82 | 1.35 | -- | 25.71 | 366 | -- | -- |
| 286.53 | 0.794 | 8.87 | 1.88 | 4.03 | -- | -0.21 | -- | -0.0452 | 5.97 | -- | -- | -- | -- |
| 286.64 | 0.793 | 8.87 | 1.88 | 4.03 | -- | -- | -- | -0.0444 | 5.97 | -- | -- | -- | -- |
| 575.65 | 1.12 | 8.75 | 2.77 | -- | -2.85 | -- | -- | 0.917 | -- | 25.9 | 362 | -- | -- |
| 351.16 | 0.878 | 8.89 | -- | 4.02 | -0.802 | -- | -- | -0.122 | 6.12 | 20.5 | 1353 | -- | -- |
| 1129.73 | 1.57 | 8.94 | 2 | -- | -- | -- | -- | 0.0479 | -- | -- | -- | -- | -- |
| 379.85 | 0.912 | 8.92 | -- | 4.06 | -- | -- | -- | -0.254 | 5.95 | -- | -- | -- | -- |
| 769.88 | 1.29 | 8.82 | -- | -- | -2.6 | -- | -- | 0.567 | -- | 25.89 | 363 | -- | -- |
| 1235.21 | 1.64 | 8.99 | -- | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.38 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 22 |
| 3 | 199.43 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 13 |
| 11 | 200.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 23 | 201.36 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 28 | 201.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 40 | 201.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 45 | 201.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 63 | 202.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 66 | 202.17 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 102 | 202.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 141 | 203.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 161 | 203.85 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 194 | 204.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 225 | 204.85 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 23 |
| 290 | 205.69 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 22 |
| 454 | 208.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 460 | 208.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 550 | 209.18 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 628 | 209.89 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 664 | 210.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 689 | 210.38 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 709 | 210.59 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 711 | 210.62 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 712 | 210.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 717 | 210.68 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 732 | 210.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 766 | 211.05 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 786 | 211.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 802 | 211.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 815 | 211.42 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 844 | 211.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 855 | 211.77 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 939 | 212.42 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 951 | 212.47 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 952 | 212.47 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 967 | 212.52 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |