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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0498300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MutS III domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.028) R2 : 0.122
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.493 (0.0666) R2dC : 0.106 R2C : 0.0991
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.18 (0.0589) R2dN8 : 0.0232 R2N8 : 0.0167
σ : 0.528
deviance : 127.39
__
_____
C
peak time of C : 23.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.77 0.465 3.51 -0.82 0.519 -0.86 -1.47 0.897 -0.323 24 81 1459 -- --
98.44 0.462 3.51 -0.754 0.511 -0.804 -1.43 -- -0.31 24 81.8 1459 -- --
105.13 0.478 3.51 -0.798 0.357 -0.685 -- 1.24 -0.294 24 80 1081 -- --
107.26 0.482 3.51 -0.679 0.506 -0.743 -- -- -0.3 23.7 82.28 1436 -- --
108.65 0.485 3.5 -0.802 -- -0.889 -- 1.38 -0.321 -- 81.26 1001 -- --
106.28 0.483 3.5 -0.756 0.496 -- -1.37 -- -0.264 24 -- -- -- --
114.43 0.501 3.5 -0.701 0.501 -- -- -- -0.258 23.9 -- -- -- --
111.86 0.493 3.5 -0.65 -- -0.807 -- -- -0.3 -- 84 984 -- --
117.54 0.505 3.5 -- 0.426 -0.839 -- -- -0.286 1.17 83.18 2102 -- --
130.24 0.533 3.49 -0.686 -- -- -- -- -0.251 -- -- -- -- --
127.39 0.528 3.48 -- 0.493 -- -- -- -0.18 23.8 -- -- -- --
123.06 0.517 3.49 -- -- -0.852 -- -- -0.231 -- 83 994 -- --
142.66 0.558 3.47 -- -- -- -- -- -0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 96.04 temperature 10 720 > th dose dependent sin 18 NA
2 96.11 temperature 15 720 > th dose dependent rect. 12 14
6 96.26 temperature 15 720 > th dose dependent rect. 13 11
8 96.32 temperature 10 1440 > th dose dependent rect. 15 1
11 96.35 temperature 30 270 < th dose dependent rect. 15 10
12 96.37 temperature 30 270 < th dose dependent sin 16 NA
15 96.44 temperature 10 720 > th dose dependent rect. 13 9
20 96.47 temperature 10 720 > th dose dependent rect. 10 18
43 96.64 humidity 60 14400 < th dose dependent rect. 16 18
58 96.74 temperature 30 720 < th dose dependent sin 19 NA
62 96.75 temperature 30 720 < th dose dependent rect. 14 7
66 96.77 humidity 70 14400 < th dose dependent rect. 17 4
82 96.78 humidity 70 14400 < th dose dependent rect. 17 15
91 96.82 humidity 60 14400 < th dose independent rect. 17 16
100 96.84 temperature 30 720 < th dose dependent rect. 8 15
101 96.84 temperature 10 720 > th dose dependent rect. 7 17
102 96.85 humidity 60 14400 < th dose independent rect. 16 4
113 96.87 humidity 60 14400 > th dose independent rect. 17 3
127 96.88 humidity 60 14400 > th dose independent rect. 17 12
135 96.89 humidity 60 14400 > th dose independent rect. 17 9
136 96.89 humidity 60 14400 > th dose independent rect. 17 14
150 96.90 humidity 80 90 < th dose dependent rect. 17 15
185 97.00 temperature 10 720 > th dose dependent rect. 7 21
218 97.06 temperature 30 720 < th dose dependent rect. 11 12
232 97.09 humidity 50 1440 > th dose dependent rect. 15 17
236 97.10 humidity 90 1440 < th dose dependent rect. 17 15
243 97.12 temperature 30 720 < th dose dependent rect. 11 14
245 97.12 humidity 90 1440 < th dose dependent rect. 15 17
279 97.16 humidity 80 1440 > th dose independent rect. 17 16
328 97.22 atmosphere 1005 270 > th dose dependent rect. 18 3
372 97.29 atmosphere 1010 720 < th dose dependent rect. 17 2
429 97.35 humidity 80 1440 < th dose independent rect. 17 16
431 97.35 humidity 80 1440 > th dose independent rect. 17 20
446 97.37 atmosphere 1005 270 > th dose dependent rect. 19 1
481 97.41 atmosphere 1005 270 > th dose dependent rect. 16 6
497 97.42 temperature 30 720 < th dose dependent rect. 5 18
498 97.43 temperature 30 720 < th dose dependent rect. 17 3
521 97.45 atmosphere 1005 720 > th dose dependent rect. 11 9
536 97.47 humidity 90 1440 < th dose dependent sin 13 NA
549 97.48 humidity 80 1440 > th dose independent rect. 10 23
560 97.48 temperature 20 720 > th dose dependent rect. 12 21
570 97.50 humidity 80 1440 > th dose independent rect. 17 5
633 97.57 humidity 90 1440 < th dose dependent rect. 15 12
656 97.59 humidity 50 1440 > th dose dependent rect. 15 14
670 97.60 humidity 90 1440 < th dose dependent rect. 18 5
680 97.60 humidity 50 1440 > th dose dependent rect. 15 12
689 97.61 humidity 50 1440 > th dose dependent sin 14 NA
728 97.64 humidity 80 1440 < th dose independent rect. 17 5
764 97.67 humidity 90 1440 < th dose dependent rect. 15 9
766 97.67 atmosphere 995 720 > th dose dependent rect. 11 10
779 97.68 humidity 90 1440 < th dose dependent rect. 17 7
821 97.72 humidity 80 1440 > th dose independent rect. 2 21
825 97.72 humidity 50 1440 > th dose dependent rect. 15 9
834 97.73 humidity 80 1440 > th dose independent rect. 6 17
851 97.74 temperature 25 720 > th dose dependent rect. 15 18
856 97.75 temperature 20 10 < th dose dependent sin 15 NA
959 97.81 humidity 80 1440 > th dose independent rect. 6 21
965 97.81 humidity 70 1440 > th dose dependent rect. 18 5
973 97.81 humidity 70 1440 > th dose dependent rect. 17 21
975 97.82 humidity 80 1440 < th dose independent rect. 10 23
978 97.82 humidity 60 1440 > th dose dependent rect. 17 7
996 97.84 humidity 80 1440 < th dose independent rect. 17 20