Os05g0497800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0497800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.74 | 0.505 | 7.79 | 0.221 | 0.937 | 1.66 | -0.314 | 1.98 | -0.207 | 4.43 | 25.25 | 938 | -- | -- |
| 120.18 | 0.511 | 7.74 | 0.588 | 0.962 | 1.52 | -0.422 | -- | -0.114 | 4.49 | 26.29 | 1063 | -- | -- |
| 115.89 | 0.501 | 7.79 | 0.209 | 0.963 | 1.68 | -- | 2.06 | -0.205 | 4.5 | 25.32 | 992 | -- | -- |
| 120.62 | 0.512 | 7.74 | 0.589 | 0.971 | 1.5 | -- | -- | -0.114 | 4.69 | 26.29 | 1085 | -- | -- |
| 157.22 | 0.584 | 7.78 | 0.326 | -- | 1.68 | -- | 1.93 | -0.13 | -- | 26.5 | 1932 | -- | -- |
| 152.75 | 0.579 | 7.81 | 0.147 | 0.899 | -- | 0.096 | -- | -0.449 | 5.44 | -- | -- | -- | -- |
| 152.77 | 0.579 | 7.81 | 0.147 | 0.899 | -- | -- | -- | -0.449 | 5.41 | -- | -- | -- | -- |
| 131.62 | 0.534 | 7.75 | 0.621 | -- | 1.93 | -- | -- | -0.0946 | -- | 31.18 | 305 | -- | -- |
| 128.48 | 0.528 | 7.77 | -- | 0.961 | 1.22 | -- | -- | -0.232 | 4.78 | 26.29 | 1075 | -- | -- |
| 194.89 | 0.652 | 7.83 | 0.178 | -- | -- | -- | -- | -0.427 | -- | -- | -- | -- | -- |
| 153.34 | 0.579 | 7.82 | -- | 0.902 | -- | -- | -- | -0.466 | 5.4 | -- | -- | -- | -- |
| 140.88 | 0.553 | 7.78 | -- | -- | 1.74 | -- | -- | -0.198 | -- | 31.49 | 288 | -- | -- |
| 195.72 | 0.653 | 7.83 | -- | -- | -- | -- | -- | -0.447 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 3 | 107.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 8 | 108.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 16 | 109.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 28 | 110.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 42 | 111.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 63 | 112.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 85 | 113.66 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 100 | 114.18 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 101 | 114.20 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 103 | 114.25 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 117 | 114.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 119 | 114.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 125 | 114.78 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 134 | 114.88 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 139 | 114.92 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 143 | 114.97 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 161 | 115.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 182 | 115.47 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 187 | 115.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 201 | 115.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 239 | 115.92 | temperature | 20 | 10 | > th | dose dependent | sin | 4 | NA |
| 258 | 116.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 268 | 116.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 328 | 116.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 356 | 116.43 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 407 | 116.63 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 475 | 116.86 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 477 | 116.87 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 18 |
| 490 | 116.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 550 | 117.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 575 | 117.12 | wind | 9 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 582 | 117.13 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 624 | 117.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 693 | 117.33 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 748 | 117.43 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 850 | 117.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 851 | 117.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 866 | 117.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 881 | 117.65 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 887 | 117.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 894 | 117.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 946 | 117.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 947 | 117.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 948 | 117.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 965 | 117.76 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 15 |