Os05g0497700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os05g0497700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.02 | 0.182 | 9.62 | -0.563 | 0.218 | 0.369 | 0.123 | 0.459 | 0.0638 | 23.5 | 29.68 | 274 | -- | -- |
| 15.07 | 0.181 | 9.62 | -0.517 | 0.215 | 0.416 | 0.13 | -- | 0.0715 | 23.4 | 29.6 | 275 | -- | -- |
| 15.06 | 0.181 | 9.62 | -0.585 | 0.214 | 0.356 | -- | 0.596 | 0.0671 | 23.2 | 29.59 | 270 | -- | -- |
| 15.13 | 0.181 | 9.62 | -0.52 | 0.216 | 0.422 | -- | -- | 0.0721 | 23.2 | 29.62 | 275 | -- | -- |
| 17.61 | 0.195 | 9.62 | -0.59 | -- | 0.349 | -- | 0.605 | 0.0806 | -- | 29.3 | 232 | -- | -- |
| 19.07 | 0.205 | 9.61 | -0.577 | 0.28 | -- | 0.341 | -- | 0.0761 | 2.02 | -- | -- | -- | -- |
| 19.48 | 0.207 | 9.61 | -0.586 | 0.279 | -- | -- | -- | 0.0744 | 1.71 | -- | -- | -- | -- |
| 17.8 | 0.197 | 9.61 | -0.517 | -- | 0.409 | -- | -- | 0.0904 | -- | 29.45 | 233 | -- | -- |
| 22.05 | 0.219 | 9.6 | -- | 0.236 | 0.522 | -- | -- | 0.141 | 22.5 | 29.6 | 421 | -- | -- |
| 24.24 | 0.23 | 9.61 | -0.575 | -- | -- | -- | -- | 0.0807 | -- | -- | -- | -- | -- |
| 28.55 | 0.25 | 9.6 | -- | 0.269 | -- | -- | -- | 0.14 | 1.64 | -- | -- | -- | -- |
| 24.75 | 0.232 | 9.59 | -- | -- | 0.459 | -- | -- | 0.148 | -- | 29.46 | 236 | -- | -- |
| 32.96 | 0.268 | 9.6 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.52 | humidity | 70 | 270 | > th | dose independent | sin | 19 | NA |
| 4 | 14.62 | humidity | 60 | 270 | > th | dose dependent | sin | 19 | NA |
| 6 | 14.63 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 13 |
| 10 | 14.67 | humidity | 60 | 270 | > th | dose dependent | rect. | 9 | 13 |
| 15 | 14.76 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 16 |
| 20 | 14.81 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 22 | 14.82 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 23 | 14.82 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 12 |
| 32 | 14.86 | humidity | 70 | 270 | < th | dose independent | rect. | 11 | 9 |
| 36 | 14.86 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 13 |
| 52 | 14.88 | humidity | 70 | 270 | < th | dose independent | sin | 19 | NA |
| 60 | 14.90 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 22 |
| 68 | 14.91 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 14 |
| 72 | 14.92 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 108 | 14.96 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 23 |
| 125 | 14.99 | temperature | 10 | 270 | > th | dose dependent | sin | 21 | NA |
| 127 | 14.99 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 8 |
| 133 | 15.00 | humidity | 90 | 270 | < th | dose dependent | sin | 20 | NA |
| 135 | 15.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 143 | 15.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 148 | 15.03 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 8 |
| 157 | 15.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 176 | 15.05 | humidity | 60 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 207 | 15.09 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 15 |
| 209 | 15.09 | humidity | 70 | 270 | > th | dose independent | rect. | 6 | 23 |
| 212 | 15.09 | humidity | 50 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 252 | 15.13 | radiation | 1 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 259 | 15.14 | humidity | 50 | 720 | > th | dose dependent | sin | 1 | NA |
| 264 | 15.15 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 6 |
| 291 | 15.17 | temperature | 25 | 270 | > th | dose dependent | sin | 20 | NA |
| 293 | 15.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 321 | 15.19 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 22 |
| 323 | 15.19 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 23 |
| 342 | 15.20 | temperature | 30 | 270 | > th | dose independent | sin | 21 | NA |
| 350 | 15.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 381 | 15.21 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 23 |
| 428 | 15.23 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |
| 465 | 15.24 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 499 | 15.25 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 17 |
| 564 | 15.28 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 20 |
| 575 | 15.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 593 | 15.29 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 19 |
| 596 | 15.29 | radiation | 1 | 270 | > th | dose dependent | sin | 14 | NA |
| 601 | 15.29 | humidity | 90 | 10 | < th | dose dependent | rect. | 14 | 7 |
| 656 | 15.31 | radiation | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 661 | 15.31 | radiation | 1 | 720 | > th | dose dependent | sin | 12 | NA |
| 671 | 15.31 | radiation | 20 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 679 | 15.32 | radiation | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 716 | 15.33 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 831 | 15.34 | radiation | 20 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 834 | 15.34 | radiation | 20 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 836 | 15.34 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 837 | 15.34 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 20 |
| 868 | 15.35 | radiation | 20 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 875 | 15.35 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 19 |
| 895 | 15.35 | humidity | 90 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 922 | 15.36 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 937 | 15.36 | radiation | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 998 | 15.38 | humidity | 50 | 270 | > th | dose dependent | rect. | 6 | 23 |