Os05g0497600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0497600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.46 | 0.454 | 10.5 | -0.72 | 1.18 | -0.471 | -0.896 | 0.0871 | -0.947 | 20.8 | 19.47 | 1383 | -- | -- |
| 93.48 | 0.45 | 10.5 | -0.72 | 1.18 | -0.471 | -0.907 | -- | -0.947 | 20.8 | 19.47 | 1383 | -- | -- |
| 96.01 | 0.456 | 10.5 | -0.719 | 1.18 | -0.467 | -- | 0.216 | -0.947 | 20.9 | 19.47 | 1381 | -- | -- |
| 96.08 | 0.457 | 10.5 | -0.687 | 1.19 | -0.452 | -- | -- | -0.94 | 20.9 | 19.33 | 1389 | -- | -- |
| 138.22 | 0.548 | 10.5 | -0.451 | -- | -0.781 | -- | 1.14 | -1.07 | -- | 2.171 | 1071 | -- | -- |
| 101.74 | 0.473 | 10.5 | -0.67 | 1.22 | -- | -0.806 | -- | -0.842 | 20.9 | -- | -- | -- | -- |
| 103.87 | 0.477 | 10.5 | -0.644 | 1.22 | -- | -- | -- | -0.843 | 21.1 | -- | -- | -- | -- |
| 111.98 | 0.493 | 10.6 | -0.764 | -- | -1.72 | -- | -- | -1.07 | -- | 1.92 | 1080 | -- | -- |
| 108.17 | 0.484 | 10.5 | -- | 1.2 | -0.46 | -- | -- | -0.879 | 21 | 19.98 | 1450 | -- | -- |
| 189.41 | 0.643 | 10.5 | -0.642 | -- | -- | -- | -- | -0.85 | -- | -- | -- | -- | -- |
| 114.8 | 0.501 | 10.5 | -- | 1.22 | -- | -- | -- | -0.771 | 21 | -- | -- | -- | -- |
| 128.77 | 0.529 | 10.6 | -- | -- | -1.7 | -- | -- | -0.982 | -- | 2.216 | 1083 | -- | -- |
| 200.27 | 0.661 | 10.5 | -- | -- | -- | -- | -- | -0.779 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.16 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 3 | 89.30 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 5 | 89.36 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 6 | 89.37 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 7 | 89.41 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 9 | 89.42 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 23 | 89.57 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 24 | 89.58 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 40 | 89.64 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 65 | 89.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 130 | 89.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 156 | 90.07 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 170 | 90.12 | wind | 3.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 171 | 90.12 | wind | 3.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 175 | 90.13 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 183 | 90.15 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 206 | 90.22 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 221 | 90.26 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 227 | 90.27 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 229 | 90.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 234 | 90.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 238 | 90.28 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 240 | 90.28 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 271 | 90.36 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 306 | 90.43 | wind | 1.0 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 319 | 90.45 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 332 | 90.49 | wind | 3.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 379 | 90.60 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 417 | 90.66 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 423 | 90.68 | wind | 9.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 444 | 90.72 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 498 | 90.81 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 18 |
| 575 | 90.92 | wind | 9.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 594 | 90.94 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 13 | 12 |
| 601 | 90.95 | wind | 1.0 | 14400 | > th | dose independent | rect. | 16 | 10 |
| 603 | 90.95 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 12 | 13 |
| 637 | 90.99 | wind | 9.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 643 | 90.99 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 723 | 91.06 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 749 | 91.08 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 750 | 91.09 | temperature | 20.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 751 | 91.09 | temperature | 20.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 802 | 91.13 | wind | 1.0 | 14400 | > th | dose independent | rect. | 11 | 15 |
| 805 | 91.13 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 822 | 91.14 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 828 | 91.15 | wind | 5.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 850 | 91.17 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 869 | 91.18 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 876 | 91.18 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 885 | 91.19 | wind | 1.0 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 928 | 91.22 | wind | 3.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 968 | 91.25 | wind | 5.0 | 43200 | > th | dose independent | sin | 4 | NA |