Os05g0494900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eggshell protein family protein.
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Os05g0494900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eggshell protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.01 | 0.225 | 12.3 | 2.02 | 0.635 | -0.723 | -0.249 | 2.43 | 0.505 | 17.6 | 21.56 | 1268 | -- | -- |
| 29.58 | 0.253 | 12.3 | 1.52 | 0.578 | -0.57 | -0.415 | -- | 0.405 | 16.9 | 18.9 | 7026 | -- | -- |
| 23.12 | 0.224 | 12.3 | 2.04 | 0.629 | -0.73 | -- | 2.54 | 0.503 | 17.6 | 22.04 | 1234 | -- | -- |
| 28.15 | 0.247 | 12.3 | 1.47 | 0.647 | -0.713 | -- | -- | 0.375 | 17.3 | 13.05 | 8418 | -- | -- |
| 43.7 | 0.308 | 12.2 | 2.04 | -- | -0.811 | -- | 2.55 | 0.504 | -- | 22.26 | 1265 | -- | -- |
| 36.79 | 0.284 | 12.4 | 1.12 | 0.678 | -- | -0.283 | -- | 0.183 | 17.2 | -- | -- | -- | -- |
| 36.99 | 0.285 | 12.4 | 1.12 | 0.676 | -- | -- | -- | 0.182 | 17.2 | -- | -- | -- | -- |
| 49.17 | 0.327 | 12.3 | 1.46 | -- | -0.77 | -- | -- | 0.327 | -- | 15.13 | 4158 | -- | -- |
| 56.29 | 0.349 | 12.4 | -- | 0.616 | 0.529 | -- | -- | -0.0996 | 17.4 | 18.34 | 47520 | -- | -- |
| 60.9 | 0.365 | 12.4 | 1.1 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 70.17 | 0.392 | 12.4 | -- | 0.656 | -- | -- | -- | 0.0566 | 17.2 | -- | -- | -- | -- |
| 79.37 | 0.415 | 12.4 | -- | -- | 0.556 | -- | -- | -0.145 | -- | 17.3 | 47520 | -- | -- |
| 92.71 | 0.449 | 12.4 | -- | -- | -- | -- | -- | 0.0427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 5 | 22.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 14 |
| 30 | 22.96 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 87 | 23.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 90 | 23.41 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 140 | 23.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 152 | 23.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 168 | 23.57 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 176 | 23.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 22 |
| 179 | 23.58 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 191 | 23.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 22 |
| 208 | 23.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 245 | 23.63 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 291 | 23.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 416 | 23.76 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 417 | 23.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 464 | 23.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 594 | 23.90 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |