Os05g0494800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0494800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.02 | 0.319 | 11.3 | 2.07 | 0.811 | -1.22 | -0.328 | 1.05 | 0.239 | 17.3 | 16.16 | 611 | -- | -- |
| 46.84 | 0.319 | 11.3 | 1.9 | 0.844 | -1.3 | -0.119 | -- | 0.225 | 17.2 | 13.38 | 571 | -- | -- |
| 46.26 | 0.317 | 11.3 | 2.03 | 0.814 | -1.23 | -- | 0.885 | 0.233 | 17.3 | 16 | 609 | -- | -- |
| 46.77 | 0.319 | 11.3 | 1.87 | 0.832 | -1.29 | -- | -- | 0.186 | 17.2 | 13.43 | 573 | -- | -- |
| 58.76 | 0.357 | 11.3 | 2.13 | -- | -1.2 | -- | 1.03 | 0.247 | -- | 14.02 | 1218 | -- | -- |
| 66.29 | 0.382 | 11.4 | 1.57 | 0.571 | -- | -0.242 | -- | -0.00791 | 16.1 | -- | -- | -- | -- |
| 66.46 | 0.382 | 11.4 | 1.57 | 0.569 | -- | -- | -- | -0.00927 | 16 | -- | -- | -- | -- |
| 59.77 | 0.36 | 11.3 | 1.91 | -- | -1.19 | -- | -- | 0.189 | -- | 13.41 | 1215 | -- | -- |
| 128.64 | 0.531 | 11.4 | -- | 0.669 | -0.508 | -- | -- | -0.123 | 15.7 | 12.12 | 372 | -- | -- |
| 84.08 | 0.428 | 11.4 | 1.55 | -- | -- | -- | -- | -0.0244 | -- | -- | -- | -- | -- |
| 131.39 | 0.536 | 11.4 | -- | 0.538 | -- | -- | -- | -0.184 | 16.1 | -- | -- | -- | -- |
| 143.94 | 0.559 | 11.4 | -- | -- | -0.406 | -- | -- | -0.138 | -- | 9.791 | 1174 | -- | -- |
| 147.17 | 0.566 | 11.4 | -- | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 20 | 45.47 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 58 | 45.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 61 | 45.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 111 | 45.75 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 128 | 45.79 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 158 | 45.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 208 | 45.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 244 | 45.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 301 | 46.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 331 | 46.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 340 | 46.13 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 346 | 46.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 379 | 46.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 380 | 46.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 389 | 46.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 408 | 46.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 416 | 46.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 502 | 46.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 524 | 46.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 601 | 46.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 871 | 46.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 964 | 46.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 965 | 46.67 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |