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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0493800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MtN21 nodulin protein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.93 (0.0765) R2 : 0.421
β1 : 1.77 (0.277) R2dD : 0.0684 R2D : 0.0331
β2 : 1.09 (0.165) R2dC : 0.0559 R2C : -0.0189
β3 : -3.32 (0.334) R2dE : 0.194 R2E : 0.0981
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.38 (1.16) R2dD*E : 0.0805 R2D*E : -0.11
γ1 : 1.34 (0.148) R2dN8 : 0.147 R2N8 : 0.00486
σ : 1.25
deviance : 724.97
__
_____
C
peak time of C : 9.41
E
wheather : wind
threshold : 4.961
memory length : 8172
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.5
open length of G : 13.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
724.46 1.26 3.93 1.74 1.08 -3.31 0.578 -7.49 1.33 9.44 5.012 8150 14.5 13.5
789.69 1.31 4.13 1.95 1.19 -2.25 0.956 -- 1.22 9.45 5 8266 13.5 14
724.97 1.25 3.93 1.77 1.09 -3.32 -- -7.38 1.34 9.41 4.961 8172 14.5 13.4
790.9 1.31 4.13 1.9 1.17 -2.22 -- -- 1.21 9.51 5.033 8266 13.5 14
790.46 1.31 3.96 1.64 -- -3.19 -- -7.37 1.33 -- 4.66 7981 14.5 13.4
891.67 1.4 4.16 2.9 1.19 -- 0.607 -- 1.11 9.74 -- -- -- --
893.07 1.4 4.16 2.93 1.19 -- -- -- 1.11 9.74 -- -- -- --
856.26 1.36 4.18 1.77 -- -2.51 -- -- 1.15 -- 4.759 8091 13.9 11.5
871.56 1.37 4.17 -- 1.19 -2.8 -- -- 1.03 9.48 5.041 8167 13.6 15.2
977.39 1.46 4.19 2.92 -- -- -- -- 1.11 -- -- -- -- --
1118.8 1.56 4.24 -- 1.18 -- -- -- 0.786 9.55 -- -- -- --
926.28 1.42 4.17 -- -- -3.2 -- -- 1.02 -- 4.763 8112 14 12.6
1201.58 1.62 4.27 -- -- -- -- -- 0.79 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 707.85 wind 5 14400 > th dose independent rect. 24 17
2 709.28 wind 5 14400 < th dose independent rect. 24 17
27 721.17 wind 5 14400 > th dose dependent rect. 24 16
40 723.82 humidity 80 14400 > th dose independent rect. 22 1
50 725.16 wind 5 14400 > th dose dependent rect. 21 19
68 728.89 wind 5 14400 > th dose independent rect. 10 6
71 729.26 wind 5 14400 > th dose independent sin 2 NA
76 729.80 wind 5 14400 < th dose independent sin 2 NA
86 731.01 wind 5 14400 < th dose independent rect. 9 7
90 731.32 wind 5 14400 > th dose dependent rect. 11 5
107 733.36 wind 9 43200 > th dose dependent rect. 13 1
128 736.75 wind 5 14400 > th dose dependent rect. 15 1
143 738.38 humidity 60 43200 > th dose independent rect. 11 1
149 738.87 wind 9 14400 > th dose independent rect. 14 1
150 738.88 wind 5 14400 > th dose dependent sin 2 NA
165 739.84 wind 9 14400 < th dose independent rect. 14 1
241 745.18 wind 9 14400 > th dose dependent rect. 17 23
244 745.38 wind 9 14400 > th dose dependent rect. 13 16
249 745.62 wind 9 14400 > th dose dependent rect. 13 21
260 746.08 wind 9 14400 > th dose dependent rect. 13 13
262 746.09 wind 9 14400 > th dose dependent rect. 13 11
265 746.25 wind 9 14400 > th dose dependent rect. 13 9
287 747.49 radiation 10 14400 > th dose independent rect. 5 1
325 749.10 humidity 60 43200 < th dose independent rect. 11 1
381 751.27 humidity 60 43200 < th dose independent rect. 10 3
392 751.52 wind 5 14400 > th dose independent rect. 15 1
393 751.53 humidity 70 43200 < th dose dependent rect. 10 1
402 751.75 humidity 80 14400 < th dose independent rect. 22 1
412 752.26 wind 9 14400 > th dose dependent sin 18 NA
421 752.56 wind 9 14400 > th dose dependent rect. 23 22
422 752.62 wind 9 14400 > th dose dependent rect. 4 17
437 752.75 wind 9 14400 > th dose dependent rect. 4 20
444 752.79 wind 9 14400 > th dose dependent rect. 6 23
465 752.89 wind 9 14400 > th dose dependent no NA NA
574 755.72 wind 5 14400 > th dose independent rect. 10 21
602 756.70 radiation 40 43200 < th dose independent rect. 10 1
639 757.94 wind 5 14400 > th dose independent no NA NA
642 758.26 wind 5 14400 < th dose independent rect. 10 21
652 758.54 wind 5 14400 > th dose independent rect. 6 23
660 758.67 wind 5 4320 > th dose dependent rect. 14 13
692 759.82 radiation 40 43200 < th dose independent rect. 16 19
698 759.94 radiation 40 43200 < th dose independent rect. 5 6
703 759.96 radiation 40 43200 < th dose independent rect. 18 17
711 760.00 radiation 40 43200 < th dose independent rect. 22 13
725 760.31 wind 5 14400 < th dose independent no NA NA
735 760.61 radiation 40 43200 > th dose independent rect. 10 1
743 760.74 radiation 10 43200 < th dose independent rect. 8 1
745 760.76 atmosphere 1000 14400 < th dose independent rect. 21 1
751 760.84 wind 5 14400 > th dose dependent rect. 9 22
753 760.92 atmosphere 1000 14400 > th dose independent rect. 21 1
756 760.95 radiation 20 43200 < th dose independent rect. 17 16
765 761.04 wind 1 43200 < th dose dependent rect. 2 1
767 761.07 wind 5 14400 < th dose independent rect. 6 23
768 761.08 wind 5 14400 > th dose independent rect. 14 23
788 761.43 radiation 20 43200 < th dose independent rect. 6 3
797 761.48 radiation 20 43200 < th dose independent rect. 22 11
800 761.49 wind 5 14400 > th dose dependent no NA NA
811 761.66 wind 5 14400 > th dose dependent rect. 6 23
818 761.87 wind 5 14400 > th dose dependent rect. 2 23
879 762.84 wind 9 14400 > th dose independent rect. 13 16
887 762.94 atmosphere 1000 14400 < th dose independent rect. 17 1
930 763.54 wind 9 14400 > th dose independent rect. 13 11
931 763.56 wind 9 14400 > th dose independent rect. 13 13
942 763.75 wind 9 43200 > th dose dependent rect. 13 6
944 763.77 wind 5 14400 < th dose independent rect. 14 23
956 764.00 atmosphere 1000 4320 < th dose independent rect. 15 3
978 764.30 atmosphere 1000 4320 > th dose independent rect. 17 1
979 764.31 atmosphere 1000 4320 > th dose independent rect. 15 3