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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0493400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclin box (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0218) R2 : 0.00407
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0626 (0.0459) R2dN8 : 0.00526 R2N8 : 0.00407
σ : 0.41
deviance : 77.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.74 0.403 1.05 -3.87 0.0755 -353 -0.298 -746 0.0662 4.44 15 90 -- --
76.73 0.411 2.89 -0.0479 0.0791 -0.0178 -0.209 -- 0.0547 5.93 15.11 30 -- --
74.96 0.403 1.05 -3.86 0.0714 -353 -- -746 0.0653 5.08 15.02 85 -- --
75.87 0.406 2.89 0.00438 0.0721 0.505 -- -- 0.0591 6 17.57 155 -- --
75.26 0.404 1.07 -3.83 -- -353 -- -746 0.0696 -- 15.01 85 -- --
76.73 0.411 2.89 -0.0472 0.0792 -- -0.208 -- 0.0548 5.95 -- -- -- --
76.83 0.41 2.89 -0.0486 0.079 -- -- -- 0.0558 6.53 -- -- -- --
76.17 0.406 2.89 -0.0011 -- 0.504 -- -- 0.0693 -- 17.55 154 -- --
75.85 0.406 2.89 -- 0.0791 0.506 -- -- 0.0681 6.51 17.5 154 -- --
77.15 0.41 2.89 -0.0466 -- -- -- -- 0.0574 -- -- -- -- --
76.89 0.41 2.89 -- 0.0784 -- -- -- 0.0612 6.57 -- -- -- --
76.17 0.406 2.89 -- -- 0.505 -- -- 0.0695 -- 17.55 154 -- --
77.21 0.41 2.89 -- -- -- -- -- 0.0626 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.03 temperature 25.0 270 > th dose independent rect. 1 1
2 64.55 temperature 25.0 90 > th dose independent rect. 1 4
4 64.83 temperature 25.0 30 > th dose independent rect. 4 1
7 65.04 temperature 25.0 90 > th dose dependent rect. 4 1
9 65.18 humidity 90.0 10 < th dose independent rect. 4 1
14 65.68 wind 1.0 30 > th dose dependent rect. 4 1
15 65.74 temperature 25.0 90 > th dose dependent rect. 2 3
18 65.92 temperature 25.0 270 > th dose dependent rect. 1 1
19 65.95 wind 1.0 30 > th dose independent rect. 4 1
25 66.98 atmosphere 1005.0 30 > th dose dependent rect. 4 1
38 67.98 wind 9.0 30 < th dose independent rect. 5 23
49 68.53 atmosphere 1005.0 30 > th dose independent rect. 4 1
50 68.54 wind 3.0 30 < th dose independent rect. 4 1
55 68.56 temperature 10.0 30 > th dose independent rect. 4 1
57 68.56 temperature 30.0 30 < th dose independent rect. 4 1
58 68.56 humidity 50.0 30 > th dose independent rect. 4 1
62 68.56 atmosphere 995.0 30 > th dose independent rect. 4 1
64 68.56 atmosphere 1010.0 30 < th dose independent rect. 4 1
66 68.56 radiation 1.0 30 < th dose independent rect. 4 1
71 68.56 precipitation 0.1 30 < th dose independent rect. 4 1
72 68.56 temperature 10.0 30 > th dose independent rect. 5 23
73 68.56 radiation 1.0 30 < th dose dependent rect. 4 1
78 68.56 precipitation 0.1 30 < th dose dependent rect. 4 1
82 68.65 wind 7.0 1440 < th dose independent rect. 5 1
84 68.65 temperature 10.0 1440 > th dose independent rect. 5 1
87 68.65 temperature 30.0 1440 < th dose independent rect. 5 1
91 68.65 humidity 50.0 1440 > th dose independent rect. 5 1
100 68.65 atmosphere 995.0 1440 > th dose independent rect. 5 1
101 68.65 atmosphere 1015.0 1440 < th dose independent rect. 5 1
102 68.65 radiation 20.0 1440 < th dose independent rect. 5 1
111 68.65 temperature 10.0 1440 > th dose independent rect. 6 23
114 68.67 humidity 50.0 30 > th dose dependent rect. 4 1
115 68.69 wind 9.0 30 < th dose dependent rect. 4 1
123 68.79 atmosphere 1015.0 30 < th dose dependent rect. 4 1
125 68.80 temperature 30.0 30 < th dose dependent rect. 4 1
172 69.26 atmosphere 995.0 30 > th dose independent rect. 5 23
188 69.61 wind 9.0 30 < th dose independent rect. 3 23
200 69.90 atmosphere 1005.0 30 > th dose dependent rect. 2 3
201 69.91 precipitation 0.1 30 < th dose independent rect. 5 23
202 69.91 precipitation 0.1 30 < th dose dependent rect. 5 23
219 70.20 atmosphere 1005.0 30 > th dose dependent rect. 2 1
223 70.23 atmosphere 1005.0 30 > th dose independent rect. 2 1
228 70.26 wind 3.0 30 < th dose dependent rect. 2 1
234 70.29 wind 3.0 30 < th dose independent rect. 2 1
239 70.35 humidity 80.0 30 > th dose independent rect. 2 1
245 70.38 temperature 10.0 30 > th dose independent rect. 2 1
247 70.38 temperature 30.0 30 < th dose independent rect. 2 1
248 70.38 humidity 50.0 30 > th dose independent rect. 2 1
252 70.38 atmosphere 1010.0 30 < th dose independent rect. 2 1
254 70.38 radiation 1.0 30 < th dose independent rect. 2 1
259 70.38 precipitation 0.1 30 < th dose independent rect. 2 1
260 70.38 temperature 10.0 30 > th dose independent rect. 3 23
261 70.38 humidity 50.0 30 > th dose dependent rect. 2 1
263 70.38 radiation 1.0 30 < th dose dependent rect. 2 1
268 70.38 precipitation 0.1 30 < th dose dependent rect. 2 1
282 70.67 atmosphere 1015.0 30 < th dose dependent rect. 2 1
283 70.72 humidity 90.0 10 < th dose dependent rect. 4 1
289 70.84 temperature 30.0 30 < th dose dependent rect. 2 1
304 71.09 wind 1.0 30 > th dose independent rect. 2 1
388 71.88 atmosphere 1005.0 30 > th dose independent rect. 2 3
397 72.03 temperature 25.0 1440 < th dose independent rect. 1 1
409 72.23 temperature 10.0 30 > th dose dependent rect. 5 21
410 72.24 wind 7.0 30 < th dose independent rect. 5 21
415 72.31 radiation 10.0 43200 < th dose dependent rect. 3 1
426 72.37 radiation 10.0 4320 < th dose dependent rect. 3 1
434 72.38 wind 9.0 1440 < th dose independent rect. 3 1
435 72.38 temperature 10.0 1440 > th dose independent rect. 3 1
438 72.38 temperature 30.0 1440 < th dose independent rect. 3 1
442 72.38 humidity 50.0 1440 > th dose independent rect. 3 1
451 72.38 atmosphere 995.0 1440 > th dose independent rect. 3 1
452 72.38 radiation 1.0 1440 < th dose independent rect. 3 1
472 72.38 temperature 10.0 1440 > th dose independent rect. 4 23
485 72.41 wind 1.0 30 > th dose independent rect. 5 23
526 72.77 wind 3.0 30 < th dose independent rect. 2 3
535 72.82 wind 3.0 30 < th dose dependent rect. 2 3
556 72.92 temperature 30.0 30 < th dose independent rect. 5 23
561 72.97 humidity 90.0 270 < th dose independent rect. 1 1
572 73.02 temperature 15.0 90 > th dose independent rect. 5 20
576 73.04 temperature 15.0 90 > th dose independent rect. 5 10
578 73.05 humidity 50.0 30 > th dose independent rect. 5 23
587 73.08 atmosphere 995.0 30 > th dose independent rect. 3 23
598 73.14 temperature 15.0 90 > th dose independent rect. 5 8
614 73.18 wind 9.0 30 < th dose dependent rect. 5 21
651 73.26 temperature 25.0 720 < th dose independent rect. 21 5
652 73.26 atmosphere 1000.0 30 > th dose independent rect. 5 21
661 73.28 wind 7.0 90 < th dose independent rect. 5 8
674 73.33 precipitation 0.1 30 < th dose independent rect. 2 3
677 73.33 precipitation 0.1 30 < th dose dependent rect. 2 3
686 73.36 wind 9.0 1440 < th dose independent rect. 3 3
687 73.36 temperature 10.0 1440 > th dose independent rect. 3 3
690 73.36 temperature 30.0 1440 < th dose independent rect. 3 3
694 73.36 humidity 50.0 1440 > th dose independent rect. 3 3
703 73.36 atmosphere 995.0 1440 > th dose independent rect. 3 3
704 73.36 radiation 20.0 1440 < th dose independent rect. 3 3
715 73.36 temperature 10.0 1440 > th dose independent rect. 6 21
725 73.40 temperature 10.0 30 > th dose independent rect. 2 3
727 73.40 temperature 30.0 30 < th dose independent rect. 2 3
728 73.40 humidity 50.0 30 > th dose independent rect. 2 3
733 73.40 atmosphere 995.0 30 > th dose independent rect. 2 3
735 73.40 atmosphere 1010.0 30 < th dose independent rect. 2 3
737 73.40 radiation 1.0 30 < th dose independent rect. 2 3
744 73.40 precipitation 0.1 30 < th dose independent rect. 3 23
745 73.40 radiation 20.0 30 < th dose dependent rect. 2 3
749 73.40 precipitation 0.1 30 < th dose dependent rect. 3 23
750 73.41 precipitation 0.1 30 < th dose independent rect. 5 21
757 73.41 precipitation 0.1 30 < th dose dependent rect. 5 21
759 73.42 wind 7.0 90 < th dose independent rect. 5 10
776 73.46 temperature 10.0 30 > th dose dependent rect. 5 23
781 73.49 temperature 25.0 720 > th dose independent rect. 18 11
786 73.50 wind 3.0 270 < th dose dependent rect. 2 1
787 73.50 temperature 15.0 90 > th dose dependent rect. 5 8
800 73.54 radiation 1.0 10 < th dose dependent rect. 4 4
815 73.57 wind 7.0 10 < th dose independent rect. 5 9
902 73.70 humidity 50.0 30 > th dose dependent rect. 2 3
931 73.74 temperature 15.0 90 > th dose independent rect. 5 12
934 73.75 humidity 50.0 30 > th dose independent rect. 5 21
941 73.76 radiation 1.0 10 < th dose independent rect. 2 6
971 73.80 wind 9.0 90 < th dose dependent rect. 5 8
987 73.83 radiation 1.0 30 < th dose dependent rect. 2 6