Os05g0492600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR type resistance protein (Fragment).
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Os05g0492600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR type resistance protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 481.88 | 1.03 | 4.21 | 2.54 | 0.546 | 0.904 | 1.29 | 3.97 | 1.3 | 23.5 | 0.001009 | 4683 | -- | -- |
| 488.83 | 1.03 | 4.28 | 2.5 | 0.553 | 1.88 | 1.19 | -- | 1.29 | 24 | 0.2834 | 2309 | -- | -- |
| 487.49 | 1.03 | 4.21 | 2.52 | 0.551 | 0.966 | -- | 3.97 | 1.3 | 0.718 | -0.05718 | 4805 | -- | -- |
| 492.45 | 1.03 | 4.27 | 2.41 | 0.544 | 1.97 | -- | -- | 1.27 | 0.849 | 0.2217 | 2227 | -- | -- |
| 506.94 | 1.05 | 4.19 | 2.5 | -- | 0.919 | -- | 4.12 | 1.32 | -- | -4.768e-05 | 4839 | -- | -- |
| 541.81 | 1.09 | 4.31 | 3.03 | 0.581 | -- | 1.45 | -- | 1.17 | 23.7 | -- | -- | -- | -- |
| 549.35 | 1.1 | 4.31 | 2.97 | 0.598 | -- | -- | -- | 1.16 | 0.802 | -- | -- | -- | -- |
| 509.74 | 1.05 | 4.27 | 2.41 | -- | 2.05 | -- | -- | 1.29 | -- | 0.3111 | 2221 | -- | -- |
| 622.08 | 1.16 | 4.31 | -- | 0.523 | 3.14 | -- | -- | 1.12 | 1.02 | -0.0649 | 2221 | -- | -- |
| 571.69 | 1.12 | 4.3 | 2.99 | -- | -- | -- | -- | 1.18 | -- | -- | -- | -- | -- |
| 781.44 | 1.31 | 4.38 | -- | 0.646 | -- | -- | -- | 0.834 | 1.01 | -- | -- | -- | -- |
| 639.6 | 1.18 | 4.3 | -- | -- | 3.22 | -- | -- | 1.14 | -- | -0.1006 | 2221 | -- | -- |
| 807.4 | 1.33 | 4.37 | -- | -- | -- | -- | -- | 0.844 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 469.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 3 | 469.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 4 | 469.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 17 | 470.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 18 | 470.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 24 | 470.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 10 |
| 25 | 470.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 10 |
| 26 | 470.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 9 |
| 51 | 471.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 12 |
| 58 | 471.08 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 20 | NA |
| 83 | 471.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 97 | 471.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 99 | 471.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 6 |
| 113 | 471.79 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 20 | NA |
| 122 | 471.88 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 20 | NA |
| 123 | 471.88 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 20 | NA |
| 156 | 472.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 184 | 472.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 186 | 472.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 242 | 473.09 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 253 | 473.25 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 284 | 473.50 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 309 | 473.63 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 451 | 475.70 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 482 | 476.08 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 517 | 476.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 753 | 479.52 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 756 | 479.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 774 | 479.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 775 | 479.81 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 801 | 480.42 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 894 | 481.48 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 906 | 481.66 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 907 | 481.68 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 914 | 481.74 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 15 |
| 916 | 481.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 917 | 481.85 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 920 | 481.88 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 927 | 482.02 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 945 | 482.12 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 967 | 482.31 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 9 | NA |
| 973 | 482.50 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 989 | 482.66 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 995 | 482.79 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 1000 | 482.83 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |