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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0492200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0137) R2 : 0.000725
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0165 (0.0288) R2dN8 : 0.000936 R2N8 : 0.000725
σ : 0.257
deviance : 30.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.3 0.25 2.98 0.0508 0.0989 -0.183 -0.00122 0.213 -0.0109 10.9 1010 15 -- --
28.44 0.248 2.98 0.0366 0.0985 -0.19 -0.0308 -- -0.0133 10.8 1010 14 -- --
28.3 0.248 2.98 0.0508 0.0989 -0.183 -- 0.214 -0.0109 10.9 1010 14 -- --
28.45 0.248 2.98 0.0356 0.0986 -0.19 -- -- -0.0133 10.8 1010 15 -- --
28.89 0.25 2.98 0.0495 -- -0.202 -- 0.21 -0.0114 -- 1010 17 -- --
29.52 0.255 2.98 0.0275 0.117 -- -0.0355 -- -0.0133 10.5 -- -- -- --
29.53 0.254 2.98 0.0261 0.118 -- -- -- -0.0134 10.5 -- -- -- --
29.04 0.251 2.98 0.035 -- -0.209 -- -- -0.0138 -- 1010 20 -- --
28.48 0.249 2.98 -- 0.0984 -0.189 -- -- -0.0172 10.8 1010 14 -- --
30.37 0.258 2.98 0.024 -- -- -- -- -0.0139 -- -- -- -- --
29.54 0.254 2.98 -- 0.117 -- -- -- -0.0163 10.5 -- -- -- --
29.07 0.251 2.98 -- -- -0.207 -- -- -0.0177 -- 1010 19 -- --
30.39 0.257 2.98 -- -- -- -- -- -0.0165 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.42 radiation 10 10 > th dose independent rect. 6 1
27 26.42 radiation 10 10 > th dose dependent rect. 6 1
55 27.13 humidity 50 4320 > th dose independent rect. 16 1
56 27.13 humidity 70 4320 > th dose independent rect. 21 7
59 27.30 wind 1 14400 < th dose independent rect. 17 1
60 27.34 humidity 70 4320 > th dose independent rect. 21 4
64 27.39 wind 1 14400 > th dose independent rect. 17 1
69 27.48 atmosphere 1010 10 > th dose dependent rect. 12 1
102 27.50 humidity 70 4320 > th dose independent rect. 20 1
198 27.60 atmosphere 1010 10 < th dose independent rect. 4 16
199 27.60 wind 3 30 < th dose dependent rect. 6 1
202 27.67 wind 1 14400 < th dose dependent rect. 17 1
203 27.68 humidity 80 4320 < th dose independent rect. 4 4
204 27.68 atmosphere 1010 30 > th dose dependent sin 23 NA
206 27.68 wind 9 4320 > th dose dependent rect. 14 1
207 27.68 atmosphere 1005 30 > th dose dependent rect. 6 1
209 27.69 wind 5 30 > th dose independent rect. 11 2
225 27.70 humidity 80 4320 > th dose independent rect. 3 5
433 27.71 atmosphere 1010 10 < th dose independent sin 2 NA
448 27.72 atmosphere 1010 10 < th dose independent rect. 4 18
483 27.75 humidity 50 4320 < th dose independent rect. 11 3
512 27.77 wind 9 43200 < th dose independent rect. 4 4
629 27.80 wind 9 43200 > th dose dependent rect. 23 8
642 27.81 wind 9 4320 < th dose independent rect. 7 1
644 27.81 wind 9 43200 < th dose independent rect. 5 2
648 27.82 wind 9 43200 > th dose independent rect. 1 7
649 27.82 atmosphere 1010 10 < th dose independent rect. 4 13
659 27.83 wind 9 43200 > th dose independent rect. 4 4
660 27.83 humidity 70 4320 > th dose independent rect. 20 13
664 27.83 wind 7 43200 > th dose dependent rect. 3 6
667 27.84 wind 9 43200 > th dose independent rect. 23 9
672 27.86 wind 9 43200 < th dose independent rect. 1 7
677 27.86 wind 9 43200 > th dose dependent rect. 23 6
680 27.87 humidity 70 4320 < th dose independent rect. 20 11
682 27.87 humidity 80 30 > th dose dependent rect. 6 1
706 27.89 humidity 80 4320 < th dose independent rect. 23 9
710 27.89 wind 9 43200 > th dose dependent rect. 5 2
721 27.90 humidity 80 4320 < th dose dependent rect. 3 5
723 27.90 humidity 70 4320 < th dose dependent rect. 20 11
726 27.91 wind 1 14400 < th dose independent rect. 15 6
728 27.91 atmosphere 1010 10 < th dose independent rect. 3 8
731 27.91 wind 1 90 > th dose dependent rect. 11 1
745 27.92 wind 9 43200 > th dose independent rect. 5 2
749 27.92 wind 9 43200 < th dose independent rect. 23 9
767 27.93 wind 1 14400 < th dose dependent rect. 15 6
791 27.95 humidity 80 4320 < th dose dependent rect. 22 10
865 27.99 atmosphere 1010 10 < th dose independent rect. 3 23
872 27.99 wind 9 43200 > th dose dependent rect. 21 11
889 28.01 humidity 80 4320 < th dose independent sin 6 NA
894 28.01 wind 1 14400 > th dose independent rect. 15 6
895 28.01 wind 9 43200 > th dose independent rect. 23 6
905 28.01 temperature 30 30 < th dose dependent rect. 6 1
911 28.02 humidity 60 4320 > th dose independent rect. 18 1
926 28.03 humidity 80 4320 > th dose independent sin 6 NA
989 28.04 wind 9 4320 > th dose independent rect. 14 1
997 28.04 humidity 80 4320 < th dose independent rect. 23 15