Os05g0491900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase (Fragment).
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Os05g0491900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47 | 0.322 | 2.94 | -0.226 | 0.0116 | 0.542 | -0.142 | -1.88 | 0.0981 | 6.15 | 0.1948 | 3097 | -- | -- |
| 48.7 | 0.325 | 2.9 | -0.176 | 0.00476 | 0.177 | 0.169 | -- | 0.105 | 17.7 | -1.506e-05 | 4226 | -- | -- |
| 47.04 | 0.319 | 2.95 | -0.255 | 0.0115 | 0.621 | -- | -2.18 | 0.0968 | 3.29 | 0.2917 | 3095 | -- | -- |
| 48.73 | 0.325 | 2.91 | -0.184 | 0.00702 | 0.147 | -- | -- | 0.0902 | 7.22 | -0.192 | 4217 | -- | -- |
| 47.01 | 0.319 | 2.95 | -0.259 | -- | 0.676 | -- | -2.38 | 0.103 | -- | 0.2901 | 3016 | -- | -- |
| 49.06 | 0.328 | 2.91 | -0.141 | 0.0123 | -- | -0.17 | -- | 0.0749 | 7.9 | -- | -- | -- | -- |
| 49.14 | 0.328 | 2.91 | -0.145 | 0.0131 | -- | -- | -- | 0.0752 | 9.51 | -- | -- | -- | -- |
| 48.73 | 0.325 | 2.91 | -0.184 | -- | 0.145 | -- | -- | 0.0904 | -- | -0.1841 | 4217 | -- | -- |
| 49.55 | 0.328 | 2.9 | -- | 0.00826 | 0.0844 | -- | -- | 0.103 | 7 | -0.2147 | 4217 | -- | -- |
| 49.15 | 0.328 | 2.91 | -0.145 | -- | -- | -- | -- | 0.0752 | -- | -- | -- | -- | -- |
| 49.69 | 0.33 | 2.91 | -- | 0.0136 | -- | -- | -- | 0.0913 | 10.3 | -- | -- | -- | -- |
| 49.55 | 0.328 | 2.9 | -- | -- | 0.084 | -- | -- | 0.103 | -- | -0.08053 | 4217 | -- | -- |
| 49.7 | 0.329 | 2.91 | -- | -- | -- | -- | -- | 0.0913 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.92 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 2 | 38.94 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 4 |
| 6 | 38.96 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 4 |
| 24 | 39.00 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 3 |
| 27 | 39.02 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 28 | 39.02 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 33 | 39.06 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 38 | 39.07 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 51 | 39.07 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 7 |
| 71 | 39.07 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 97 | 39.07 | humidity | 60 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 101 | 39.08 | humidity | 60 | 30 | < th | dose independent | rect. | 9 | 1 |
| 150 | 39.08 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 268 | 39.10 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 432 | 39.44 | radiation | 40 | 30 | > th | dose dependent | rect. | 14 | 20 |
| 433 | 39.45 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 452 | 39.46 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 457 | 39.47 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 548 | 39.75 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 704 | 40.45 | wind | 1 | 10 | < th | dose independent | sin | 21 | NA |
| 708 | 40.53 | radiation | 40 | 30 | > th | dose dependent | sin | 12 | NA |
| 822 | 41.03 | wind | 1 | 10 | < th | dose dependent | sin | 21 | NA |
| 827 | 41.10 | radiation | 40 | 10 | > th | dose independent | rect. | 14 | 20 |
| 831 | 41.15 | wind | 1 | 10 | > th | dose independent | sin | 21 | NA |
| 832 | 41.15 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |