Os05g0491400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LRR protein.
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Os05g0491400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LRR protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 355.81 | 0.886 | 2.97 | -0.108 | 0.432 | -0.588 | -0.482 | 0.804 | 0.0818 | 13 | 11.05 | 258 | -- | -- |
| 357.23 | 0.88 | 2.97 | -0.107 | 0.398 | -0.524 | -0.153 | -- | 0.0953 | 12.7 | 12.88 | 246 | -- | -- |
| 355.9 | 0.879 | 2.97 | -0.14 | 0.434 | -0.546 | -- | 0.511 | 0.0744 | 12.1 | 11.05 | 219 | -- | -- |
| 356.31 | 0.879 | 2.97 | -0.151 | 0.435 | -0.543 | -- | -- | 0.0684 | 12.2 | 11.05 | 219 | -- | -- |
| 359.35 | 0.883 | 2.99 | -0.164 | -- | -0.387 | -- | 0.545 | 0.0447 | -- | 12.46 | 526 | -- | -- |
| 361.49 | 0.891 | 2.99 | -0.243 | 0.213 | -- | 0.652 | -- | 0.01 | 6.22 | -- | -- | -- | -- |
| 362.52 | 0.892 | 2.99 | -0.236 | 0.217 | -- | -- | -- | 0.00753 | 5.97 | -- | -- | -- | -- |
| 359.56 | 0.883 | 2.98 | -0.177 | -- | -0.358 | -- | -- | 0.0532 | -- | 12.46 | 526 | -- | -- |
| 356.89 | 0.88 | 2.97 | -- | 0.448 | -0.557 | -- | -- | 0.0779 | 12.3 | 11.05 | 219 | -- | -- |
| 364.95 | 0.893 | 2.99 | -0.23 | -- | -- | -- | -- | 0.0125 | -- | -- | -- | -- | -- |
| 364 | 0.892 | 2.98 | -- | 0.213 | -- | -- | -- | 0.0339 | 6.03 | -- | -- | -- | -- |
| 360.32 | 0.884 | 2.98 | -- | -- | -0.429 | -- | -- | 0.0781 | -- | 10.06 | 631 | -- | -- |
| 366.35 | 0.893 | 2.99 | -- | -- | -- | -- | -- | 0.038 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 340.63 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 1 |
| 2 | 340.63 | radiation | 1 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 5 | 343.45 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 3 |
| 7 | 344.97 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 10 | 345.28 | radiation | 1 | 270 | < th | dose independent | rect. | 10 | 6 |
| 12 | 345.33 | radiation | 1 | 270 | < th | dose independent | rect. | 12 | 4 |
| 13 | 345.33 | radiation | 1 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 14 | 345.41 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 6 | 1 |
| 34 | 346.70 | wind | 3 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 45 | 347.64 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 48 | 347.87 | radiation | 10 | 30 | < th | dose independent | rect. | 6 | 1 |
| 49 | 347.99 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 52 | 348.37 | wind | 3 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 55 | 348.73 | wind | 3 | 90 | > th | dose independent | rect. | 4 | 1 |
| 64 | 348.99 | wind | 3 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 65 | 349.02 | wind | 7 | 270 | > th | dose independent | rect. | 24 | 1 |
| 66 | 349.02 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 67 | 349.02 | wind | 7 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 70 | 349.03 | wind | 7 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 74 | 349.06 | wind | 5 | 90 | > th | dose independent | rect. | 24 | 4 |
| 75 | 349.08 | wind | 7 | 10 | > th | dose independent | rect. | 21 | 7 |
| 91 | 349.23 | wind | 7 | 90 | > th | dose independent | rect. | 1 | 8 |
| 92 | 349.25 | wind | 1 | 90 | < th | dose independent | rect. | 11 | 1 |
| 106 | 349.40 | wind | 5 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 124 | 349.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 125 | 349.55 | wind | 3 | 30 | > th | dose independent | rect. | 6 | 1 |
| 129 | 349.57 | humidity | 80 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 160 | 349.67 | humidity | 80 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 184 | 349.94 | wind | 1 | 90 | < th | dose dependent | rect. | 10 | 2 |
| 191 | 349.99 | humidity | 80 | 90 | > th | dose dependent | rect. | 15 | 2 |
| 209 | 350.04 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 225 | 350.12 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 1 |
| 267 | 350.33 | humidity | 80 | 270 | > th | dose independent | rect. | 12 | 4 |
| 270 | 350.35 | humidity | 80 | 90 | > th | dose independent | rect. | 15 | 2 |
| 285 | 350.52 | humidity | 90 | 30 | < th | dose independent | rect. | 5 | 2 |
| 415 | 351.16 | humidity | 80 | 270 | > th | dose independent | rect. | 9 | 7 |
| 442 | 351.35 | humidity | 80 | 90 | > th | dose independent | rect. | 14 | 4 |
| 453 | 351.41 | humidity | 80 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 489 | 351.66 | humidity | 80 | 4320 | > th | dose independent | rect. | 2 | 5 |
| 497 | 351.75 | humidity | 80 | 4320 | > th | dose independent | rect. | 1 | 7 |
| 537 | 352.06 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 545 | 352.11 | radiation | 10 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 566 | 352.20 | radiation | 20 | 270 | < th | dose dependent | rect. | 20 | 21 |
| 570 | 352.25 | humidity | 80 | 10 | > th | dose independent | rect. | 15 | 3 |
| 585 | 352.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 597 | 352.36 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 621 | 352.47 | humidity | 90 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 635 | 352.54 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 1 |
| 638 | 352.55 | humidity | 70 | 270 | > th | dose independent | rect. | 21 | 19 |
| 660 | 352.65 | humidity | 70 | 270 | > th | dose independent | rect. | 20 | 21 |
| 670 | 352.69 | humidity | 80 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 704 | 352.79 | humidity | 80 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 706 | 352.80 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 721 | 352.86 | humidity | 80 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 769 | 353.07 | humidity | 60 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 798 | 353.17 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 804 | 353.19 | humidity | 80 | 4320 | < th | dose dependent | rect. | 23 | 8 |
| 842 | 353.27 | wind | 7 | 90 | > th | dose independent | rect. | 14 | 1 |
| 881 | 353.39 | radiation | 20 | 270 | < th | dose independent | rect. | 21 | 19 |
| 917 | 353.52 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 3 |
| 938 | 353.58 | radiation | 1 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 943 | 353.60 | humidity | 80 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 947 | 353.60 | temperature | 20 | 90 | < th | dose dependent | rect. | 16 | 3 |
| 967 | 353.64 | temperature | 20 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 989 | 353.71 | humidity | 80 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 993 | 353.72 | humidity | 80 | 4320 | < th | dose independent | rect. | 1 | 2 |
| 999 | 353.73 | humidity | 80 | 4320 | > th | dose independent | rect. | 24 | 12 |