Os05g0491200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SNF1 kinase complex anchoring protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0491200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to SNF1 kinase complex anchoring protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 296.46 | 0.809 | 9.04 | -0.693 | 0.999 | 2.04 | 3.53 | -3.36 | 0.789 | 21 | 10.93 | 10 | -- | -- |
| 314.75 | 0.826 | 9.03 | -0.767 | 0.971 | 1.95 | -0.174 | -- | 0.789 | 21.6 | 7.499 | 4 | -- | -- |
| 312.45 | 0.823 | 9.05 | -0.756 | 1.12 | 1.9 | -- | -1.23 | 0.786 | 21.4 | 10.99 | 10 | -- | -- |
| 314.58 | 0.826 | 9.03 | -0.687 | 1.02 | 1.91 | -- | -- | 0.805 | 21.5 | 7.467 | 4 | -- | -- |
| 333.3 | 0.85 | 9.01 | -0.705 | -- | 2.5 | -- | -1.22 | 0.827 | -- | 7.323 | 6 | -- | -- |
| 371.01 | 0.903 | 9.09 | -0.745 | 3.09 | -- | -0.748 | -- | 0.729 | 23 | -- | -- | -- | -- |
| 373.34 | 0.905 | 9.09 | -0.713 | 3.09 | -- | -- | -- | 0.732 | 22.9 | -- | -- | -- | -- |
| 339.13 | 0.858 | 9 | -0.716 | -- | 2.52 | -- | -- | 0.81 | -- | 7.228 | 4 | -- | -- |
| 327.74 | 0.843 | 9.02 | -- | 1.06 | 1.87 | -- | -- | 0.876 | 21.5 | 7.298 | 4 | -- | -- |
| 967.99 | 1.45 | 9.01 | -0.646 | -- | -- | -- | -- | 0.754 | -- | -- | -- | -- | -- |
| 386.75 | 0.92 | 9.07 | -- | 3.09 | -- | -- | -- | 0.812 | 22.9 | -- | -- | -- | -- |
| 350.19 | 0.872 | 8.98 | -- | -- | 2.51 | -- | -- | 0.893 | -- | 7.065 | 2 | -- | -- |
| 978.99 | 1.46 | 9 | -- | -- | -- | -- | -- | 0.826 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 290.31 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 4 |
| 3 | 291.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 5 | 292.43 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 11 |
| 8 | 292.52 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 19 |
| 40 | 296.48 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 47 | 296.79 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 52 | 296.98 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 58 | 297.24 | radiation | 10 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 62 | 297.30 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 8 |
| 63 | 297.31 | radiation | 10 | 10 | < th | dose dependent | no | NA | NA |
| 65 | 297.36 | radiation | 10 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 71 | 297.55 | radiation | 10 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 77 | 297.67 | radiation | 1 | 30 | > th | dose independent | sin | 1 | NA |
| 80 | 297.74 | radiation | 10 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 82 | 297.82 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 83 | 297.88 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 87 | 298.05 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 104 | 298.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 117 | 299.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 121 | 299.42 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 16 |
| 156 | 300.24 | radiation | 10 | 10 | < th | dose dependent | sin | 2 | NA |
| 184 | 300.80 | radiation | 10 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 212 | 301.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 219 | 301.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 230 | 301.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 240 | 302.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 296 | 303.24 | radiation | 10 | 90 | < th | dose dependent | sin | 3 | NA |
| 298 | 303.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 302 | 303.37 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 322 | 303.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 351 | 304.22 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 377 | 304.59 | radiation | 10 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 511 | 306.07 | radiation | 10 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 554 | 306.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 567 | 306.54 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 586 | 306.78 | radiation | 10 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 607 | 306.99 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 628 | 307.23 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 6 |
| 639 | 307.30 | radiation | 1 | 30 | < th | dose independent | sin | 2 | NA |
| 684 | 307.74 | radiation | 10 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 770 | 308.34 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 807 | 308.68 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 814 | 308.72 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 819 | 308.78 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 823 | 308.78 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 849 | 309.08 | humidity | 60 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 872 | 309.31 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 939 | 309.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 951 | 309.96 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 955 | 309.97 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 964 | 310.03 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 981 | 310.17 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 982 | 310.20 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 987 | 310.25 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 993 | 310.33 | radiation | 10 | 10 | < th | dose dependent | rect. | 1 | 15 |