Os05g0490800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G).
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Os05g0490800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.06 | 0.315 | 11.7 | 0.234 | 0.758 | -1.54 | -0.779 | -1.46 | -0.0919 | 21.3 | 21 | 1406 | -- | -- |
| 47.03 | 0.319 | 11.6 | 0.557 | 0.834 | -1.29 | -0.775 | -- | 0.026 | 21.3 | 21.74 | 2100 | -- | -- |
| 45.94 | 0.316 | 11.7 | 0.226 | 0.823 | -1.49 | -- | -1.44 | -0.081 | 21.3 | 21.35 | 2056 | -- | -- |
| 49.24 | 0.327 | 11.6 | 0.592 | 0.834 | -1.3 | -- | -- | 0.0305 | 21.3 | 21.74 | 2101 | -- | -- |
| 80.25 | 0.417 | 11.6 | 0.303 | -- | -1.49 | -- | -1.16 | -0.0859 | -- | 21.1 | 1532 | -- | -- |
| 98.93 | 0.466 | 11.7 | -0.0355 | 0.744 | -- | -0.854 | -- | -0.381 | 21.1 | -- | -- | -- | -- |
| 101.43 | 0.472 | 11.7 | -0.00689 | 0.744 | -- | -- | -- | -0.381 | 21.2 | -- | -- | -- | -- |
| 84.02 | 0.427 | 11.6 | 0.624 | -- | -1.41 | -- | -- | -0.0192 | -- | 21 | 1562 | -- | -- |
| 56.02 | 0.349 | 11.6 | -- | 0.808 | -1.08 | -- | -- | -0.0673 | 21.3 | 22.03 | 2049 | -- | -- |
| 133.58 | 0.54 | 11.7 | -0.00426 | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
| 101.43 | 0.471 | 11.7 | -- | 0.744 | -- | -- | -- | -0.38 | 21.2 | -- | -- | -- | -- |
| 88.4 | 0.438 | 11.6 | -- | -- | -1.08 | -- | -- | -0.0807 | -- | 22.05 | 1518 | -- | -- |
| 133.58 | 0.539 | 11.7 | -- | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 2 | 46.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 8 | 46.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 28 | 46.86 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 30 | 46.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 32 | 46.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 96 | 48.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 115 | 48.60 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 391 | 50.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 415 | 50.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 419 | 50.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 466 | 50.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 467 | 50.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 473 | 50.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 477 | 50.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 494 | 50.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 498 | 50.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 517 | 50.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 525 | 50.82 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 527 | 50.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 546 | 50.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 560 | 50.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 643 | 51.05 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 666 | 51.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 679 | 51.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 689 | 51.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 698 | 51.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 712 | 51.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 741 | 51.31 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 755 | 51.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 760 | 51.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 768 | 51.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 786 | 51.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 788 | 51.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 862 | 51.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 921 | 51.70 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 973 | 51.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 11 |