Os05g0490700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SET domain protein SDG111.
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Os05g0490700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SET domain protein SDG111.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.4 | 0.178 | 12 | 1.55 | 0.241 | -0.374 | -0.0442 | 0.869 | 0.411 | 2.93 | 20.79 | 1297 | -- | -- |
| 14.78 | 0.179 | 12 | 1.3 | 0.197 | -0.448 | 0.0403 | -- | 0.344 | 0.685 | 18 | 663 | -- | -- |
| 14.4 | 0.177 | 12 | 1.55 | 0.24 | -0.373 | -- | 0.872 | 0.411 | 2.94 | 21 | 1301 | -- | -- |
| 14.77 | 0.179 | 12 | 1.3 | 0.204 | -0.449 | -- | -- | 0.347 | 0.637 | 17.9 | 668 | -- | -- |
| 15.48 | 0.184 | 12 | 1.35 | -- | -0.475 | -- | 0.446 | 0.367 | -- | 20.1 | 1711 | -- | -- |
| 18.12 | 0.2 | 12 | 1.18 | 0.201 | -- | -0.00996 | -- | 0.267 | 3.17 | -- | -- | -- | -- |
| 18.12 | 0.199 | 12 | 1.18 | 0.201 | -- | -- | -- | 0.267 | 3.17 | -- | -- | -- | -- |
| 15.39 | 0.183 | 12 | 1.32 | -- | -0.481 | -- | -- | 0.355 | -- | 18.08 | 158 | -- | -- |
| 36.72 | 0.282 | 12.1 | -- | 0.154 | 0.606 | -- | -- | -0.0686 | 2.09 | 21.93 | 47520 | -- | -- |
| 20.43 | 0.211 | 12 | 1.19 | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
| 54.89 | 0.347 | 12.1 | -- | 0.225 | -- | -- | -- | 0.135 | 3.18 | -- | -- | -- | -- |
| 35.97 | 0.279 | 12.1 | -- | -- | 0.732 | -- | -- | -0.09 | -- | 14.59 | 47520 | -- | -- |
| 57.76 | 0.355 | 12.1 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.79 | temperature | 2e+01 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 15 | 13.90 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 26 | 13.93 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 29 | 13.93 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 47 | 13.99 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 59 | 14.04 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 60 | 14.04 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 62 | 14.04 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 69 | 14.05 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 84 | 14.09 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 86 | 14.10 | temperature | 1e+01 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 90 | 14.11 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 101 | 14.13 | temperature | 2e+01 | 1440 | > th | dose dependent | sin | 19 | NA |
| 125 | 14.15 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 141 | 14.17 | precipitation | 1e-01 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 142 | 14.17 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 143 | 14.17 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 192 | 14.20 | temperature | 2e+01 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 240 | 14.25 | temperature | 3e+01 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 383 | 14.33 | temperature | 1e+01 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 406 | 14.35 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 496 | 14.38 | temperature | 2e+01 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 554 | 14.41 | humidity | 8e+01 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 660 | 14.45 | temperature | 2e+01 | 1440 | > th | dose dependent | no | NA | NA |
| 661 | 14.45 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 663 | 14.45 | humidity | 8e+01 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 745 | 14.48 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 760 | 14.48 | temperature | 1e+01 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 878 | 14.52 | temperature | 1e+01 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 884 | 14.53 | radiation | 1e+00 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 926 | 14.54 | temperature | 3e+01 | 1440 | < th | dose dependent | sin | 19 | NA |