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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0490600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : OSMYB5.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0405) R2 : 0.118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.81 (0.259) R2dE : 0.0763 R2E : 0.0763
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.35 (0.0855) R2dN8 : 0.0413 R2N8 : 0.0412
σ : 0.754
deviance : 260.4
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 3.809
memory length : 3
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.68
open length of G : 1.42

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.19 0.733 2.98 0.326 0.165 1.75 0.461 -5.3 -0.289 16.6 4.034 7 5.59 0.925
251.81 0.745 2.99 0.265 0.13 1.9 1.55 -- -0.323 17.4 3.829 6 5.66 1.57
228.97 0.71 2.99 0.306 0.147 2.16 -- -6.51 -0.297 16.2 3.942 4 5.6 0.997
257.58 0.752 2.98 0.262 0.144 1.87 -- -- -0.316 16.2 3.825 3 5.68 0.88
230.1 0.71 2.99 0.301 -- 2.09 -- -6.5 -0.303 -- 3.83 3 5.62 1.26
282.19 0.788 3 0.274 0.0287 -- -1.44 -- -0.373 5.57 -- -- -- --
287.01 0.793 2.99 0.27 0.0677 -- -- -- -0.366 10.3 -- -- -- --
258.66 0.752 2.98 0.257 -- 1.81 -- -- -0.322 -- 3.809 3 5.68 1.42
259.39 0.754 2.99 -- 0.139 1.87 -- -- -0.345 16.2 3.825 3 5.68 0.88
287.29 0.792 2.99 0.269 -- -- -- -- -0.366 -- -- -- -- --
288.93 0.795 3 -- 0.0665 -- -- -- -0.396 10 -- -- -- --
260.4 0.754 2.99 -- -- 1.81 -- -- -0.35 -- 3.809 3 5.68 1.42
289.19 0.794 3 -- -- -- -- -- -0.396 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.40 radiation 10.0 10 < th dose independent rect. 5 1
2 257.53 radiation 10.0 10 < th dose dependent rect. 5 1
8 261.19 atmosphere 1010.0 90 < th dose dependent rect. 5 1
9 261.82 humidity 90.0 90 > th dose independent rect. 5 1
12 262.52 radiation 10.0 10 < th dose dependent rect. 5 5
16 262.88 wind 1.0 10 > th dose independent rect. 5 1
18 262.99 wind 7.0 1440 < th dose independent rect. 6 1
20 262.99 temperature 10.0 1440 > th dose independent rect. 6 1
23 262.99 temperature 30.0 1440 < th dose independent rect. 6 1
27 262.99 humidity 50.0 1440 > th dose independent rect. 6 1
32 262.99 atmosphere 995.0 1440 > th dose independent rect. 6 1
33 262.99 atmosphere 1015.0 1440 < th dose independent rect. 6 1
34 262.99 radiation 40.0 1440 < th dose independent rect. 6 1
38 262.99 temperature 10.0 1440 > th dose independent rect. 7 23
48 263.47 wind 1.0 270 < th dose dependent rect. 2 1
54 264.08 humidity 80.0 30 > th dose dependent rect. 5 1
55 264.21 radiation 10.0 30 < th dose dependent rect. 5 9
60 264.60 atmosphere 1000.0 30 > th dose independent rect. 6 23
76 265.19 wind 1.0 30 > th dose dependent rect. 5 1
87 265.74 atmosphere 1005.0 10 < th dose independent rect. 5 1
108 266.19 wind 1.0 270 < th dose dependent rect. 8 20
119 266.75 temperature 10.0 30 > th dose dependent rect. 5 1
123 267.04 wind 1.0 270 < th dose independent rect. 2 1
131 267.28 temperature 30.0 30 < th dose independent rect. 6 23
143 267.67 wind 7.0 30 < th dose independent rect. 5 1
145 267.67 temperature 10.0 30 > th dose independent rect. 5 1
147 267.67 temperature 30.0 30 < th dose independent rect. 5 1
148 267.67 humidity 50.0 30 > th dose independent rect. 5 1
151 267.67 atmosphere 995.0 30 > th dose independent rect. 5 1
157 267.67 temperature 10.0 30 > th dose independent rect. 6 23
158 267.69 wind 1.0 270 < th dose independent rect. 6 1
159 267.71 precipitation 0.1 30 < th dose independent rect. 5 1
160 267.71 precipitation 0.1 30 < th dose dependent rect. 5 1
168 267.91 precipitation 0.1 10 < th dose independent rect. 8 23
169 267.91 precipitation 0.1 10 < th dose dependent rect. 8 23
174 268.12 wind 1.0 270 < th dose dependent rect. 6 1
201 268.38 precipitation 0.1 30 < th dose independent rect. 6 23
202 268.38 precipitation 0.1 30 < th dose dependent rect. 6 23
211 268.63 radiation 10.0 10 > th dose independent rect. 6 2
274 269.06 wind 9.0 30 < th dose independent rect. 6 23
294 269.22 wind 1.0 90 > th dose independent rect. 6 22
299 269.29 radiation 1.0 90 > th dose independent rect. 6 3
301 269.35 humidity 50.0 30 > th dose independent rect. 6 23
305 269.42 atmosphere 1005.0 90 < th dose independent rect. 4 7
315 269.50 atmosphere 1005.0 10 < th dose independent rect. 5 5
321 269.56 wind 1.0 270 < th dose dependent rect. 10 18
322 269.57 atmosphere 1005.0 90 < th dose independent rect. 4 5
329 269.66 radiation 10.0 10 < th dose independent rect. 5 5
330 269.68 precipitation 0.1 10 < th dose independent rect. 22 9
331 269.68 precipitation 0.1 10 < th dose dependent rect. 22 9
334 269.73 wind 3.0 90 < th dose dependent rect. 6 3
338 269.78 radiation 40.0 90 < th dose independent rect. 9 21
342 269.83 temperature 30.0 90 < th dose independent rect. 9 21
350 269.91 temperature 30.0 30 < th dose dependent rect. 5 1
352 269.92 wind 9.0 30 < th dose dependent rect. 5 1
353 269.92 wind 1.0 90 < th dose dependent rect. 8 1
354 269.93 atmosphere 1000.0 90 > th dose independent rect. 9 21
355 269.99 precipitation 0.1 90 < th dose independent rect. 9 21
356 269.99 precipitation 0.1 90 < th dose dependent rect. 9 21
362 270.07 atmosphere 1000.0 90 > th dose independent rect. 23 7
363 270.07 temperature 30.0 10 < th dose independent rect. 9 22
366 270.09 atmosphere 1005.0 90 < th dose independent rect. 4 10
368 270.11 wind 9.0 90 < th dose dependent rect. 9 21
370 270.13 atmosphere 1000.0 90 > th dose independent rect. 21 9
405 270.30 radiation 10.0 10 > th dose independent sin 10 NA
409 270.33 wind 3.0 90 < th dose independent rect. 6 3
476 270.68 temperature 30.0 90 < th dose independent rect. 22 18
478 270.69 atmosphere 1000.0 10 > th dose independent rect. 22 9
480 270.70 temperature 20.0 10 < th dose dependent rect. 6 2
492 270.75 wind 9.0 90 < th dose independent rect. 9 21
497 270.77 atmosphere 1005.0 270 < th dose independent rect. 2 7
506 270.81 atmosphere 1015.0 30 < th dose independent rect. 6 23
508 270.82 temperature 30.0 14400 > th dose dependent rect. 8 1
528 270.84 radiation 10.0 90 < th dose dependent sin 9 NA
531 270.86 wind 1.0 270 < th dose dependent rect. 16 12
534 270.88 wind 1.0 270 < th dose dependent rect. 18 10
538 270.90 radiation 10.0 10 < th dose independent sin 9 NA
546 270.93 atmosphere 1005.0 10 < th dose independent rect. 5 10
550 270.94 precipitation 0.1 90 < th dose independent rect. 21 9
551 270.94 wind 9.0 14400 > th dose dependent rect. 12 2
552 270.94 precipitation 0.1 90 < th dose dependent rect. 21 9
561 271.00 precipitation 0.1 90 < th dose independent rect. 6 3
563 271.00 precipitation 0.1 90 < th dose dependent rect. 6 3
576 271.03 atmosphere 1000.0 90 > th dose independent rect. 19 11
578 271.03 wind 9.0 90 < th dose dependent rect. 11 19
582 271.05 atmosphere 1000.0 10 > th dose independent rect. 9 22
587 271.08 temperature 20.0 90 > th dose independent rect. 6 3
595 271.12 wind 9.0 90 < th dose independent rect. 6 3
596 271.12 temperature 10.0 90 > th dose independent rect. 6 3
598 271.12 humidity 50.0 90 > th dose independent rect. 6 3
599 271.12 atmosphere 995.0 90 > th dose independent rect. 6 3
600 271.12 atmosphere 1015.0 90 < th dose independent rect. 6 3
601 271.12 temperature 10.0 90 > th dose independent rect. 9 21
613 271.18 temperature 30.0 90 < th dose dependent rect. 6 3
622 271.23 wind 5.0 4320 < th dose independent rect. 11 5
624 271.25 temperature 30.0 720 < th dose independent rect. 18 17
673 271.37 humidity 50.0 90 > th dose dependent rect. 19 11
682 271.38 precipitation 0.1 10 < th dose independent rect. 20 11
686 271.38 atmosphere 1005.0 90 < th dose independent rect. 4 18
687 271.38 precipitation 0.1 10 < th dose dependent rect. 20 11
703 271.42 radiation 20.0 10 < th dose dependent sin 9 NA
719 271.50 radiation 1.0 90 > th dose dependent rect. 5 4
735 271.53 wind 9.0 14400 > th dose independent rect. 12 2
737 271.53 humidity 90.0 90 > th dose independent rect. 5 17
741 271.54 atmosphere 1015.0 30 < th dose dependent rect. 5 18
744 271.56 wind 5.0 4320 > th dose independent rect. 11 5
745 271.56 wind 9.0 14400 > th dose dependent rect. 10 4
767 271.57 radiation 40.0 90 < th dose independent rect. 6 3
788 271.62 humidity 50.0 90 > th dose dependent rect. 21 9
790 271.63 radiation 10.0 90 < th dose independent rect. 21 9
795 271.64 radiation 40.0 90 < th dose independent rect. 11 19
827 271.77 temperature 30.0 14400 > th dose independent rect. 8 1
851 271.78 radiation 10.0 90 < th dose dependent rect. 21 10
858 271.81 radiation 10.0 10 < th dose independent rect. 22 12
871 271.86 wind 1.0 10 > th dose independent rect. 7 1
921 271.94 humidity 90.0 10 < th dose independent rect. 7 1
929 271.95 radiation 1.0 90 > th dose independent rect. 9 21
933 271.97 radiation 10.0 90 < th dose independent rect. 19 11
934 271.97 atmosphere 995.0 30 > th dose dependent rect. 5 1
937 271.98 atmosphere 1000.0 90 > th dose independent rect. 11 19
938 271.98 radiation 30.0 90 < th dose dependent rect. 21 9
955 272.02 wind 9.0 90 < th dose independent rect. 21 9
959 272.04 temperature 10.0 90 > th dose independent rect. 21 9
960 272.04 temperature 30.0 90 < th dose independent rect. 21 9
961 272.04 humidity 50.0 90 > th dose independent rect. 21 9
968 272.04 temperature 10.0 90 > th dose independent rect. 6 15
969 272.04 atmosphere 1015.0 90 < th dose independent rect. 6 15
971 272.04 humidity 50.0 90 > th dose dependent rect. 23 7
975 272.05 wind 9.0 14400 > th dose independent rect. 15 1