Os05g0490400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0490400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.06 | 0.634 | 9.17 | -1.94 | 2.42 | 1.04 | 1.85 | -2.18 | -1.04 | 5.75 | 10.01 | 1361 | -- | -- |
| 190.38 | 0.643 | 9.15 | -1.66 | 2.46 | 1.05 | 1.85 | -- | -1.03 | 5.81 | 10 | 1356 | -- | -- |
| 190.29 | 0.642 | 9.17 | -1.93 | 2.43 | 1.03 | -- | -2.2 | -1.04 | 5.68 | 10.01 | 1356 | -- | -- |
| 197.43 | 0.654 | 9.13 | -1.51 | 2.38 | 0.923 | -- | -- | -0.939 | 5.58 | 10 | 1436 | -- | -- |
| 494.77 | 1.04 | 9.19 | -1.76 | -- | 1.02 | -- | -1.83 | -0.931 | -- | 10 | 1398 | -- | -- |
| 216.01 | 0.689 | 9.05 | -1.3 | 2.42 | -- | 1.81 | -- | -0.622 | 5.54 | -- | -- | -- | -- |
| 223.87 | 0.701 | 9.06 | -1.29 | 2.43 | -- | -- | -- | -0.63 | 5.45 | -- | -- | -- | -- |
| 497.55 | 1.04 | 9.13 | -1.53 | -- | 1.08 | -- | -- | -0.846 | -- | 10.1 | 1427 | -- | -- |
| 244.74 | 0.729 | 9.1 | -- | 2.48 | 1 | -- | -- | -0.718 | 5.54 | 7.14 | 1424 | -- | -- |
| 531.25 | 1.08 | 9.09 | -1.21 | -- | -- | -- | -- | -0.571 | -- | -- | -- | -- | -- |
| 267.76 | 0.765 | 9.03 | -- | 2.41 | -- | -- | -- | -0.487 | 5.48 | -- | -- | -- | -- |
| 538.63 | 1.08 | 9.1 | -- | -- | 1.09 | -- | -- | -0.612 | -- | 7.149 | 1424 | -- | -- |
| 569.82 | 1.11 | 9.06 | -- | -- | -- | -- | -- | -0.437 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.38 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 3 | 178.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 6 | 179.14 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 7 | 179.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 8 | 179.29 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 9 | 179.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 10 | 179.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 11 | 179.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 18 | 180.01 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 23 | 180.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 26 | 180.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 28 | 180.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 29 | 180.60 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 31 | 180.61 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 33 | 180.63 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 55 | 181.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 56 | 181.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 63 | 181.82 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 122 | 182.48 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 134 | 182.64 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 208 | 183.51 | radiation | 10 | 1440 | > th | dose independent | sin | 22 | NA |
| 247 | 183.95 | humidity | 90 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 271 | 184.13 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 10 |
| 276 | 184.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 310 | 184.50 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 10 |
| 318 | 184.58 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 363 | 184.84 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 364 | 184.84 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 392 | 185.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 393 | 185.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 411 | 185.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 413 | 185.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 414 | 185.05 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 496 | 185.17 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 512 | 185.29 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 519 | 185.30 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 591 | 185.79 | humidity | 50 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 607 | 185.91 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 669 | 186.12 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 672 | 186.13 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 699 | 186.25 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 788 | 186.55 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 853 | 186.79 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 856 | 186.80 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 886 | 186.91 | humidity | 60 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 893 | 186.94 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 906 | 187.00 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 941 | 187.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 946 | 187.16 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 973 | 187.22 | humidity | 60 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 975 | 187.23 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 982 | 187.27 | humidity | 90 | 720 | > th | dose dependent | sin | 19 | NA |
| 989 | 187.29 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 996 | 187.32 | humidity | 90 | 720 | < th | dose dependent | rect. | 8 | 16 |