Os05g0489900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (EC 2.7.1.123) (LlCCaMK).
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Os05g0489900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (EC 2.7.1.123) (LlCCaMK).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.87 | 0.609 | 5.54 | -0.11 | 0.947 | 1.29 | 0.445 | 0.74 | 0.0439 | 12 | 20.6 | 954 | -- | -- |
| 169.19 | 0.606 | 5.56 | -0.242 | 0.936 | 1.2 | 0.27 | -- | 0.0117 | 12 | 20.6 | 957 | -- | -- |
| 168.64 | 0.605 | 5.54 | -0.128 | 0.945 | 1.28 | -- | 0.568 | 0.0373 | 12 | 20.55 | 954 | -- | -- |
| 169.49 | 0.606 | 5.56 | -0.236 | 0.941 | 1.21 | -- | -- | 0.0144 | 12 | 20.6 | 957 | -- | -- |
| 216.63 | 0.686 | 5.56 | -0.119 | -- | 1.26 | -- | 0.712 | 0.0222 | -- | 20.5 | 1450 | -- | -- |
| 208.51 | 0.677 | 5.5 | 0.227 | 0.779 | -- | 0.404 | -- | 0.286 | 12.2 | -- | -- | -- | -- |
| 209.21 | 0.677 | 5.5 | 0.242 | 0.778 | -- | -- | -- | 0.288 | 12.1 | -- | -- | -- | -- |
| 217.14 | 0.686 | 5.58 | -0.269 | -- | 1.17 | -- | -- | 0.012 | -- | 20.6 | 1480 | -- | -- |
| 170.75 | 0.609 | 5.55 | -- | 0.933 | 1.14 | -- | -- | 0.0547 | 12 | 20.55 | 946 | -- | -- |
| 247.28 | 0.735 | 5.52 | 0.217 | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
| 210.75 | 0.679 | 5.51 | -- | 0.774 | -- | -- | -- | 0.261 | 12.1 | -- | -- | -- | -- |
| 218.7 | 0.689 | 5.57 | -- | -- | 1.05 | -- | -- | 0.0557 | -- | 20.62 | 1472 | -- | -- |
| 248.53 | 0.736 | 5.52 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.68 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 2 | 164.79 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 10 | 165.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 24 | 167.92 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 26 | 168.39 | temperature | 10.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 28 | 168.93 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 33 | 169.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 63 | 170.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 3 |
| 68 | 171.17 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 21 |
| 80 | 171.66 | temperature | 30.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 82 | 171.70 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 84 | 171.75 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 90 | 171.84 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 111 | 172.37 | temperature | 20.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 120 | 172.55 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 19 |
| 139 | 172.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 21 |
| 148 | 173.06 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 17 |
| 156 | 173.13 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 23 |
| 160 | 173.21 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 20 |
| 177 | 173.40 | temperature | 20.0 | 720 | > th | dose independent | rect. | 24 | 23 |
| 180 | 173.49 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 15 |
| 185 | 173.57 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 18 |
| 189 | 173.59 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 191 | 173.61 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 21 |
| 203 | 173.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 18 |
| 207 | 173.80 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 20 |
| 212 | 173.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 218 | 173.93 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 224 | 174.01 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 230 | 174.06 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 255 | 174.21 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 23 |
| 294 | 174.46 | temperature | 20.0 | 720 | > th | dose independent | rect. | 15 | 23 |
| 296 | 174.48 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 312 | 174.64 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 321 | 174.70 | temperature | 20.0 | 720 | < th | dose independent | rect. | 8 | 23 |
| 336 | 174.83 | temperature | 20.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 346 | 174.86 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 364 | 174.95 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 367 | 174.96 | temperature | 20.0 | 720 | < th | dose independent | rect. | 15 | 23 |
| 400 | 175.10 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 23 |
| 411 | 175.13 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 433 | 175.23 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 440 | 175.27 | temperature | 20.0 | 720 | > th | dose independent | sin | 8 | NA |
| 460 | 175.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 504 | 175.53 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 625 | 175.98 | temperature | 20.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 713 | 176.25 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 18 |
| 789 | 176.46 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 796 | 176.49 | temperature | 20.0 | 720 | < th | dose independent | sin | 7 | NA |
| 814 | 176.54 | temperature | 25.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 829 | 176.56 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 854 | 176.64 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 922 | 176.84 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 982 | 177.02 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 993 | 177.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 23 |