Os05g0489000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Endonuclease/exonuclease/phosphatase domain containing protein.
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Os05g0489000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Endonuclease/exonuclease/phosphatase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.25 | 0.227 | 9.48 | -0.163 | 0.445 | -0.549 | 0.186 | 0.429 | 0.236 | 1.49 | 26.3 | 691 | -- | -- |
| 23.53 | 0.226 | 9.48 | -0.236 | 0.425 | -0.541 | 0.263 | -- | 0.216 | 1.31 | 26.2 | 660 | -- | -- |
| 23.39 | 0.225 | 9.48 | -0.163 | 0.445 | -0.543 | -- | 0.468 | 0.235 | 1.59 | 26.3 | 690 | -- | -- |
| 23.66 | 0.227 | 9.49 | -0.267 | 0.431 | -0.521 | -- | -- | 0.191 | 1.63 | 26.29 | 681 | -- | -- |
| 30.75 | 0.258 | 9.48 | -0.289 | -- | -0.466 | -- | 0.0478 | 0.229 | -- | 25.78 | 352 | -- | -- |
| 31.66 | 0.264 | 9.52 | -0.441 | 0.498 | -- | -0.0212 | -- | 0.0522 | 3.92 | -- | -- | -- | -- |
| 31.66 | 0.263 | 9.52 | -0.441 | 0.498 | -- | -- | -- | 0.0523 | 3.91 | -- | -- | -- | -- |
| 30.74 | 0.258 | 9.49 | -0.295 | -- | -0.474 | -- | -- | 0.212 | -- | 25.96 | 382 | -- | -- |
| 25.57 | 0.236 | 9.48 | -- | 0.443 | -0.566 | -- | -- | 0.241 | 1.5 | 26.2 | 681 | -- | -- |
| 45.24 | 0.314 | 9.52 | -0.421 | -- | -- | -- | -- | 0.0656 | -- | -- | -- | -- | -- |
| 36.79 | 0.284 | 9.51 | -- | 0.489 | -- | -- | -- | 0.101 | 3.92 | -- | -- | -- | -- |
| 32.92 | 0.267 | 9.48 | -- | -- | -0.517 | -- | -- | 0.255 | -- | 25.96 | 418 | -- | -- |
| 49.91 | 0.33 | 9.51 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.41 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 2 | 23.42 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 15 |
| 15 | 23.82 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 26 | 23.95 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 27 | 23.95 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 31 | 23.96 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 33 | 23.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 45 | 24.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 46 | 24.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 47 | 24.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 59 | 24.14 | radiation | 40 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 71 | 24.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 77 | 24.19 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 108 | 24.27 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 115 | 24.29 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 117 | 24.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 136 | 24.36 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 148 | 24.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 188 | 24.43 | radiation | 40 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 189 | 24.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 231 | 24.46 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 233 | 24.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 251 | 24.50 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 255 | 24.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 258 | 24.51 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 263 | 24.52 | radiation | 40 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 267 | 24.53 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 305 | 24.57 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 329 | 24.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 339 | 24.61 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 346 | 24.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 367 | 24.65 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 373 | 24.67 | radiation | 40 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 381 | 24.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 14 |
| 382 | 24.67 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 384 | 24.68 | radiation | 1 | 720 | > th | dose independent | sin | 20 | NA |
| 423 | 24.72 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 427 | 24.72 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 432 | 24.73 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 442 | 24.74 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 455 | 24.77 | radiation | 40 | 1440 | > th | dose independent | sin | 11 | NA |
| 496 | 24.78 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 546 | 24.84 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 547 | 24.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 565 | 24.86 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 569 | 24.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 572 | 24.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 621 | 24.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 637 | 24.88 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 642 | 24.88 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 647 | 24.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 689 | 24.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 715 | 24.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 719 | 24.92 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 745 | 24.93 | radiation | 10 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 770 | 24.94 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 772 | 24.95 | temperature | 25 | 1440 | > th | dose dependent | sin | 6 | NA |
| 773 | 24.95 | radiation | 10 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 798 | 24.96 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 807 | 24.97 | radiation | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 855 | 24.99 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 857 | 25.00 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 915 | 25.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 916 | 25.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 918 | 25.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 924 | 25.03 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 961 | 25.04 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 963 | 25.05 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 968 | 25.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 983 | 25.05 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 23 |