Os05g0487600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mitochondrial ribosomal protein S3.
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Os05g0487600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mitochondrial ribosomal protein S3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.5 | 0.228 | 9.3 | 0.425 | 0.147 | -0.686 | -0.539 | 1.59 | 0.37 | 17.5 | 24.52 | 98 | -- | -- |
| 24.37 | 0.23 | 9.33 | 0.197 | 0.14 | -0.565 | -0.306 | -- | 0.279 | 18.4 | 25.69 | 169 | -- | -- |
| 24.11 | 0.229 | 9.3 | 0.392 | 0.163 | -0.702 | -- | 1.26 | 0.37 | 17 | 24.32 | 95 | -- | -- |
| 24.57 | 0.231 | 9.33 | 0.206 | 0.175 | -0.599 | -- | -- | 0.283 | 18.5 | 25.67 | 228 | -- | -- |
| 24.67 | 0.231 | 9.32 | 0.334 | -- | -0.603 | -- | 1.27 | 0.306 | -- | 25.8 | 73 | -- | -- |
| 30.11 | 0.257 | 9.34 | 0.131 | 0.127 | -- | 0.279 | -- | 0.254 | 3.52 | -- | -- | -- | -- |
| 30.21 | 0.257 | 9.34 | 0.126 | 0.134 | -- | -- | -- | 0.253 | 2.05 | -- | -- | -- | -- |
| 25.23 | 0.234 | 9.33 | 0.203 | -- | -0.498 | -- | -- | 0.276 | -- | 25.7 | 77 | -- | -- |
| 25.75 | 0.236 | 9.34 | -- | 0.152 | -0.53 | -- | -- | 0.253 | 19.3 | 25.82 | 254 | -- | -- |
| 31.28 | 0.261 | 9.34 | 0.132 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 30.63 | 0.259 | 9.34 | -- | 0.136 | -- | -- | -- | 0.238 | 2.07 | -- | -- | -- | -- |
| 26.28 | 0.239 | 9.34 | -- | -- | -0.471 | -- | -- | 0.25 | -- | 25.79 | 77 | -- | -- |
| 31.74 | 0.263 | 9.34 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 13 | 22.94 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 25 | 23.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 29 | 23.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 32 | 23.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 34 | 23.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 47 | 23.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 141 | 23.51 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 154 | 23.53 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 171 | 23.53 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 180 | 23.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 191 | 23.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 200 | 23.57 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 326 | 23.71 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 355 | 23.74 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 374 | 23.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 550 | 23.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 663 | 24.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 906 | 24.43 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 916 | 24.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |