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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0485800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.79 (0.0536) R2 : 0.379
β1 : 0.309 (0.195) R2dD : 0.00359 R2D : -0.000394
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.99 (0.187) R2dE : 0.167 R2E : 0.158
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.92 (0.796) R2dD*E : 0.217 R2D*E : 0.201
γ1 : -0.117 (0.118) R2dN8 : 0.00197 R2N8 : 0.00441
σ : 0.986
deviance : 448.43
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6
memory length : 4218
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 2.72

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
436.97 0.982 3.79 0.282 0.305 1.96 1.31 9.96 -0.121 14.7 6.042 4187 18.3 2.73
510.26 1.05 3.69 0.448 0.372 2.73 1.27 -- 0.0305 14.5 7.516 9751 18.5 2.62
442.85 0.98 3.79 0.32 0.307 1.99 -- 9.78 -0.111 14.4 6.002 4191 18.3 2.73
510.33 1.05 3.67 0.46 0.363 2.71 -- -- 0.0927 13.9 7.675 9601 18.6 2.62
448.43 0.986 3.79 0.309 -- 1.99 -- 9.92 -0.117 -- 6 4218 18.3 2.72
699.8 1.24 3.78 0.163 0.407 -- 1.23 -- -0.247 14.1 -- -- -- --
705.47 1.24 3.78 0.199 0.407 -- -- -- -0.24 14 -- -- -- --
518.25 1.06 3.68 0.515 -- 2.75 -- -- 0.158 -- 7.68 9603 18.6 2.57
516.33 1.06 3.67 -- 0.355 2.7 -- -- 0.114 13.9 7.6 9601 18.6 2.58
715.47 1.25 3.78 0.182 -- -- -- -- -0.25 -- -- -- -- --
706.51 1.24 3.78 -- 0.404 -- -- -- -0.263 13.9 -- -- -- --
487.78 1.03 3.64 -- -- 3.07 -- -- 0.185 -- 7.919 9605 19.7 0.917
716.35 1.25 3.78 -- -- -- -- -- -0.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 443.85 wind 7 4320 < th dose independent rect. 18 3
5 451.10 wind 7 4320 > th dose independent rect. 18 3
6 451.92 wind 7 4320 > th dose dependent rect. 18 3
26 456.83 wind 9 4320 > th dose dependent rect. 19 7
61 461.57 wind 9 4320 > th dose independent rect. 19 7
71 462.24 wind 9 4320 < th dose independent rect. 18 9
104 466.61 atmosphere 995 14400 < th dose independent rect. 15 3
108 466.69 atmosphere 995 14400 < th dose independent rect. 14 5
140 466.81 atmosphere 995 14400 > th dose independent rect. 12 8
152 466.91 atmosphere 995 14400 < th dose dependent rect. 15 4
155 466.92 atmosphere 995 14400 > th dose independent rect. 10 10
157 466.94 atmosphere 995 14400 > th dose independent rect. 8 12
166 467.06 atmosphere 995 14400 > th dose independent rect. 14 6
184 467.60 atmosphere 995 14400 > th dose independent rect. 15 2
351 474.12 radiation 1 14400 < th dose dependent rect. 19 7
364 474.41 radiation 1 14400 < th dose dependent rect. 22 4
399 478.58 radiation 1 14400 < th dose dependent rect. 1 1
460 486.40 atmosphere 995 14400 > th dose independent rect. 19 21
487 490.25 atmosphere 995 14400 < th dose dependent sin 0 NA
495 490.79 atmosphere 995 14400 > th dose independent sin 3 NA
539 492.60 atmosphere 995 14400 > th dose independent sin 23 NA
543 492.75 atmosphere 1000 14400 < th dose dependent rect. 8 1
547 492.89 atmosphere 995 14400 < th dose independent sin 3 NA
574 493.58 humidity 90 1440 < th dose dependent rect. 3 1
576 493.84 atmosphere 995 14400 < th dose independent sin 22 NA
608 494.72 atmosphere 1005 14400 < th dose independent rect. 7 1
626 495.41 atmosphere 1005 14400 < th dose independent rect. 5 3
669 496.44 atmosphere 1005 14400 > th dose independent rect. 5 4
728 497.58 atmosphere 1000 14400 < th dose dependent rect. 11 1
849 498.70 atmosphere 995 14400 > th dose independent no NA NA
853 498.71 atmosphere 995 14400 > th dose independent rect. 10 23
854 498.71 atmosphere 995 14400 > th dose independent rect. 14 23
856 498.72 atmosphere 995 14400 > th dose independent rect. 12 23