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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0484700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0298) R2 : 0.00201
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.06 (0.0626) R2dN8 : 0.00259 R2N8 : 0.00201
σ : 0.56
deviance : 144.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.82 0.499 2.78 3.61 0.145 -243 0.453 1510 -0.0253 18.3 1000 90 20 1
34042.02 8.59 0.675 0.478 2.36 -174 -4.71 -- 0.745 2.84 995.1 207 18.1 3.77
115.24 0.5 2.79 3.61 0.151 -243 -- 1510 -0.0244 19.3 1000 90 20 0.999
140.86 0.556 3.35 0.19 0.184 0.508 -- -- -0.0344 19.9 1002 206 18 0.582
116.44 0.503 2.78 3.6 -- -243 -- 1520 -0.0268 -- 999.9 90 20 0.997
140.59 0.556 3.35 0.206 0.189 -- 0.492 -- -0.0363 19.1 -- -- -- --
141.16 0.556 3.35 0.195 0.191 -- -- -- -0.036 19.8 -- -- -- --
126.9 0.525 3.33 0.213 -- 2.4 -- -- 0.0276 -- 1003 313 17.8 0.967
127.64 0.526 3.35 -- 0.173 2.68 -- -- -0.041 19.5 999.2 293 17.9 1.25
143.14 0.559 3.35 0.192 -- -- -- -- -0.0386 -- -- -- -- --
142.16 0.558 3.36 -- 0.19 -- -- -- -0.0576 19.9 -- -- -- --
117.26 0.504 3.37 -- -- 5.16 -- -- -0.068 -- 996.3 220 20 0.329
144.12 0.56 3.35 -- -- -- -- -- -0.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.82 atmosphere 1000.0 90 < th dose independent rect. 20 1
3 114.82 atmosphere 1000.0 90 < th dose dependent rect. 20 1
29 117.94 atmosphere 1010.0 10 < th dose dependent rect. 22 1
36 120.87 temperature 25.0 10 > th dose dependent rect. 21 2
45 121.95 temperature 25.0 90 > th dose dependent rect. 20 3
62 124.93 temperature 25.0 30 > th dose independent rect. 20 3
63 124.93 atmosphere 1005.0 270 < th dose dependent rect. 18 1
64 125.07 atmosphere 1000.0 270 < th dose dependent rect. 18 4
79 126.09 atmosphere 1000.0 30 > th dose independent rect. 23 23
82 126.49 atmosphere 1000.0 270 < th dose independent rect. 18 1
85 126.56 atmosphere 1000.0 10 < th dose independent rect. 18 5
158 127.87 temperature 25.0 90 > th dose dependent rect. 20 7
169 128.26 humidity 90.0 10 < th dose independent rect. 20 3
173 128.28 atmosphere 995.0 720 > th dose independent rect. 23 16
181 128.38 wind 3.0 10 > th dose independent rect. 22 1
195 128.75 temperature 30.0 270 > th dose independent rect. 18 1
209 128.77 wind 3.0 10 > th dose independent rect. 20 3
217 128.92 wind 5.0 10 < th dose independent rect. 20 3
221 128.99 radiation 10.0 14400 < th dose dependent rect. 23 1
223 129.01 humidity 90.0 10 < th dose independent rect. 22 1
227 129.08 wind 1.0 10 > th dose dependent rect. 22 1
228 129.10 humidity 90.0 10 < th dose dependent rect. 22 1
237 129.27 precipitation 0.1 1440 < th dose independent rect. 23 1
238 129.27 precipitation 0.1 1440 < th dose dependent rect. 23 1
248 129.42 wind 1.0 90 < th dose dependent rect. 20 1
266 129.66 wind 5.0 10 < th dose independent rect. 22 1
267 129.66 precipitation 0.1 10 < th dose independent rect. 22 1
268 129.66 precipitation 0.1 10 < th dose dependent rect. 22 1
272 129.70 precipitation 0.1 30 < th dose independent rect. 20 3
275 129.70 precipitation 0.1 30 < th dose dependent rect. 20 3
280 129.72 precipitation 0.1 30 < th dose independent rect. 23 23
283 129.72 precipitation 0.1 30 < th dose dependent rect. 23 23
286 129.73 wind 9.0 1440 < th dose independent rect. 23 1
287 129.73 temperature 10.0 10 > th dose independent rect. 22 1
289 129.73 temperature 10.0 1440 > th dose independent rect. 23 1
292 129.73 temperature 30.0 10 < th dose independent rect. 22 1
293 129.73 temperature 30.0 1440 < th dose independent rect. 23 1
297 129.73 humidity 50.0 10 > th dose independent rect. 22 1
300 129.73 humidity 50.0 1440 > th dose independent rect. 23 1
310 129.73 atmosphere 995.0 10 > th dose independent rect. 22 1
311 129.73 atmosphere 995.0 1440 > th dose independent rect. 23 1
314 129.73 radiation 1.0 10 < th dose independent rect. 22 1
319 129.73 radiation 1.0 1440 < th dose independent rect. 23 1
339 129.73 temperature 10.0 10 > th dose independent rect. 23 23
340 129.73 temperature 10.0 1440 > th dose independent rect. 24 23
343 129.73 radiation 1.0 10 < th dose dependent rect. 22 1
354 129.76 atmosphere 1005.0 30 > th dose dependent rect. 22 1
358 129.82 radiation 10.0 4320 < th dose dependent rect. 21 3
361 129.84 atmosphere 1005.0 30 > th dose independent rect. 22 1
369 129.87 humidity 50.0 10 > th dose dependent rect. 22 1
371 129.88 temperature 30.0 10 < th dose dependent rect. 22 1
395 129.91 wind 9.0 10 < th dose dependent rect. 22 1
417 129.98 temperature 10.0 1440 > th dose independent rect. 21 3
420 129.98 temperature 30.0 1440 < th dose independent rect. 21 3
424 129.98 humidity 50.0 1440 > th dose independent rect. 21 3
430 129.98 atmosphere 995.0 1440 > th dose independent rect. 21 3
431 129.98 radiation 1.0 1440 < th dose independent rect. 21 3
451 129.98 temperature 10.0 1440 > th dose independent rect. 24 21
454 129.98 radiation 40.0 43200 < th dose dependent rect. 21 3
466 130.03 atmosphere 1000.0 720 < th dose dependent rect. 10 5
473 130.07 atmosphere 1000.0 720 < th dose dependent rect. 10 7
480 130.15 wind 9.0 30 < th dose independent rect. 23 21
481 130.16 temperature 10.0 30 > th dose independent rect. 20 3
483 130.16 temperature 30.0 30 < th dose independent rect. 20 3
484 130.16 humidity 50.0 30 > th dose independent rect. 20 3
487 130.16 atmosphere 995.0 30 > th dose independent rect. 20 3
490 130.16 radiation 1.0 30 < th dose independent rect. 20 3
495 130.16 temperature 10.0 30 > th dose independent rect. 23 21
496 130.16 atmosphere 995.0 30 > th dose independent rect. 23 21
497 130.16 radiation 1.0 30 < th dose dependent rect. 20 3
526 130.37 atmosphere 1005.0 30 > th dose dependent rect. 20 3
538 130.46 atmosphere 995.0 1440 > th dose independent rect. 24 23
541 130.47 atmosphere 995.0 1440 > th dose independent rect. 24 21
545 130.50 wind 9.0 30 < th dose dependent rect. 20 3
549 130.53 wind 9.0 10 < th dose independent rect. 23 23
567 130.54 atmosphere 995.0 720 > th dose independent rect. 13 22
577 130.62 precipitation 0.1 30 < th dose independent rect. 23 21
578 130.62 precipitation 0.1 30 < th dose dependent rect. 23 21
583 130.70 atmosphere 1000.0 720 < th dose dependent rect. 10 11
587 130.75 atmosphere 1000.0 720 < th dose independent rect. 10 5
595 130.85 atmosphere 1000.0 720 < th dose independent rect. 10 3
636 131.07 atmosphere 1010.0 270 < th dose dependent rect. 13 9
637 131.09 humidity 50.0 30 > th dose dependent rect. 20 3
651 131.18 humidity 70.0 270 < th dose dependent rect. 18 1
652 131.19 atmosphere 1000.0 720 > th dose independent rect. 10 10
658 131.23 humidity 90.0 30 < th dose dependent rect. 20 3
668 131.27 atmosphere 1000.0 720 < th dose dependent sin 22 NA
677 131.33 radiation 40.0 720 > th dose independent rect. 11 2
710 131.50 atmosphere 1000.0 720 < th dose independent rect. 10 11
711 131.51 atmosphere 1000.0 720 < th dose independent rect. 10 9
733 131.60 atmosphere 995.0 1440 > th dose independent rect. 15 6
734 131.60 atmosphere 1015.0 30 < th dose independent rect. 23 21
735 131.60 humidity 50.0 30 > th dose independent rect. 23 23
752 131.66 atmosphere 995.0 720 > th dose independent rect. 11 16
753 131.66 temperature 30.0 30 < th dose independent rect. 23 21
755 131.67 humidity 70.0 270 < th dose independent rect. 18 1
756 131.67 wind 1.0 90 < th dose dependent rect. 16 5
766 131.70 radiation 30.0 720 > th dose dependent rect. 11 2
769 131.71 atmosphere 1005.0 90 < th dose independent rect. 13 9
780 131.78 atmosphere 995.0 1440 > th dose independent rect. 22 23
791 131.84 wind 1.0 10 > th dose dependent rect. 20 3
797 131.86 radiation 40.0 720 < th dose independent rect. 23 21
802 131.88 atmosphere 1015.0 30 < th dose dependent rect. 7 16
829 132.01 atmosphere 995.0 1440 < th dose independent rect. 18 1
854 132.01 atmosphere 995.0 1440 < th dose dependent rect. 18 1
881 132.03 atmosphere 995.0 270 > th dose independent sin 8 NA
884 132.04 humidity 50.0 30 > th dose independent rect. 23 21
885 132.04 atmosphere 1015.0 720 < th dose dependent rect. 11 2
920 132.15 radiation 20.0 30 < th dose dependent rect. 23 8
921 132.15 atmosphere 1015.0 30 < th dose dependent rect. 12 11
925 132.17 atmosphere 995.0 1440 > th dose independent rect. 15 8
936 132.19 atmosphere 995.0 1440 > th dose independent rect. 17 3
937 132.19 atmosphere 995.0 720 > th dose independent rect. 13 7