Os05g0480500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0480500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.36 | 0.545 | 5.7 | 1.88 | 1.22 | 0.554 | -1.12 | -1.99 | 0.0987 | 22.7 | 1013 | 5733 | -- | -- |
| 146.49 | 0.564 | 5.75 | 1.49 | 1.24 | 0.668 | -1.19 | -- | 0.00959 | 22.6 | 1008 | 6273 | -- | -- |
| 139.49 | 0.55 | 5.7 | 1.95 | 1.23 | 0.55 | -- | -2.04 | 0.107 | 22.6 | 1013 | 5759 | -- | -- |
| 147.25 | 0.565 | 5.74 | 1.76 | 1.23 | 1.03 | -- | -- | 0.0486 | 22.5 | 1016 | 6019 | -- | -- |
| 232.1 | 0.71 | 5.67 | 1.99 | -- | 0.57 | -- | -2.02 | 0.112 | -- | 1013 | 5877 | -- | -- |
| 159.41 | 0.592 | 5.78 | 1.25 | 1.22 | -- | -1.18 | -- | -0.116 | 22.6 | -- | -- | -- | -- |
| 165.09 | 0.602 | 5.78 | 1.3 | 1.23 | -- | -- | -- | -0.112 | 22.5 | -- | -- | -- | -- |
| 239.77 | 0.721 | 5.71 | 1.77 | -- | 1.04 | -- | -- | 0.0521 | -- | 1016 | 6083 | -- | -- |
| 208.11 | 0.676 | 5.81 | -- | 1.22 | 0.629 | -- | -- | -0.25 | 22.6 | 1016 | 6019 | -- | -- |
| 258.3 | 0.751 | 5.75 | 1.32 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 209.45 | 0.677 | 5.81 | -- | 1.24 | -- | -- | -- | -0.256 | 22.6 | -- | -- | -- | -- |
| 298.6 | 0.807 | 5.78 | -- | -- | 1.28 | -- | -- | -0.239 | -- | 1016 | 6019 | -- | -- |
| 304.21 | 0.814 | 5.78 | -- | -- | -- | -- | -- | -0.253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.01 | wind | 9 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 2 | 136.85 | temperature | 15 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 3 | 136.92 | wind | 7 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 4 | 137.01 | temperature | 15 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 5 | 137.29 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 8 | 137.81 | temperature | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 10 | 138.19 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 11 | 138.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 12 | 138.28 | humidity | 50 | 14400 | < th | dose dependent | rect. | 12 | 22 |
| 14 | 138.34 | humidity | 50 | 14400 | < th | dose dependent | rect. | 12 | 6 |
| 29 | 138.35 | humidity | 50 | 14400 | < th | dose dependent | sin | 17 | NA |
| 38 | 138.47 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 14 |
| 39 | 138.48 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 40 | 138.49 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 51 | 138.50 | humidity | 50 | 14400 | < th | dose dependent | no | NA | NA |
| 53 | 138.50 | humidity | 50 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 176 | 138.53 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 179 | 138.56 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 181 | 138.56 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 23 |
| 188 | 138.57 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 18 | 13 |
| 206 | 138.60 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 214 | 138.63 | humidity | 50 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 241 | 138.65 | humidity | 50 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 244 | 138.67 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 13 | NA |
| 319 | 138.77 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 351 | 138.86 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 360 | 138.89 | humidity | 60 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 365 | 138.90 | humidity | 60 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 381 | 138.95 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 399 | 139.00 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 17 |
| 407 | 139.01 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 433 | 139.04 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 491 | 139.10 | humidity | 50 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 541 | 139.19 | humidity | 50 | 14400 | < th | dose dependent | sin | 9 | NA |
| 548 | 139.21 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 564 | 139.24 | atmosphere | 1010 | 4320 | > th | dose dependent | no | NA | NA |
| 573 | 139.25 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 574 | 139.25 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 580 | 139.26 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 586 | 139.27 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 797 | 139.72 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 850 | 139.88 | humidity | 50 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 897 | 140.05 | humidity | 50 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 927 | 140.11 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 929 | 140.12 | humidity | 50 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 963 | 140.15 | humidity | 50 | 14400 | > th | dose independent | rect. | 12 | 1 |