Os05g0480400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os05g0480400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.97 | 0.55 | 6.9 | -0.958 | 0.804 | 0.14 | -0.182 | 5.25 | -0.3 | 2.73 | 30.2 | 1387 | -- | -- |
| 141.57 | 0.554 | 7.01 | -1.85 | 0.837 | 0.757 | 0.056 | -- | -0.321 | 2.6 | 29.25 | 2843 | -- | -- |
| 137.06 | 0.545 | 6.9 | -0.945 | 0.808 | 0.132 | -- | 5.29 | -0.3 | 2.79 | 30.2 | 1395 | -- | -- |
| 136.37 | 0.544 | 7.01 | -1.96 | 0.835 | 0.761 | -- | -- | -0.325 | 2.67 | 29.12 | 5744 | -- | -- |
| 172.73 | 0.612 | 6.88 | -0.872 | -- | 0.212 | -- | 5.88 | -0.254 | -- | 29.9 | 1246 | -- | -- |
| 165.65 | 0.603 | 7.04 | -1.68 | 0.9 | -- | 0.0274 | -- | -0.45 | 2.78 | -- | -- | -- | -- |
| 165.65 | 0.603 | 7.04 | -1.68 | 0.9 | -- | -- | -- | -0.45 | 2.77 | -- | -- | -- | -- |
| 174.81 | 0.616 | 7.04 | -1.96 | -- | 0.929 | -- | -- | -0.435 | -- | 27.3 | 5604 | -- | -- |
| 228.41 | 0.704 | 6.98 | -- | 0.826 | 0.468 | -- | -- | -0.181 | 2.67 | 29.99 | 5764 | -- | -- |
| 212.69 | 0.681 | 7.04 | -1.65 | -- | -- | -- | -- | -0.427 | -- | -- | -- | -- | -- |
| 240.45 | 0.725 | 7 | -- | 0.867 | -- | -- | -- | -0.262 | 2.75 | -- | -- | -- | -- |
| 266.93 | 0.761 | 6.97 | -- | -- | 0.561 | -- | -- | -0.131 | -- | 30.2 | 5578 | -- | -- |
| 284.18 | 0.787 | 7 | -- | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.84 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 124.85 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 4 | 124.88 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 6 | 124.91 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 27 | 125.29 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 50 | 126.31 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 62 | 126.42 | humidity | 70.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 121 | 128.26 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 127 | 128.38 | humidity | 70.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 206 | 129.67 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 311 | 130.52 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 16 |
| 326 | 130.52 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 343 | 130.76 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 376 | 131.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 379 | 131.65 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 444 | 132.26 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 499 | 133.12 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 520 | 133.28 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 596 | 133.52 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 686 | 133.93 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 688 | 133.94 | humidity | 90.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 721 | 134.00 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 728 | 134.05 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 742 | 134.15 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 743 | 134.15 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 15 | 21 |
| 746 | 134.18 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 749 | 134.19 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 771 | 134.26 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 781 | 134.30 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 783 | 134.31 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 794 | 134.38 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 796 | 134.39 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 805 | 134.42 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 812 | 134.45 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 815 | 134.47 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 861 | 134.62 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 875 | 134.67 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 944 | 134.78 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 955 | 134.80 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 22 |
| 959 | 134.80 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 961 | 134.81 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 966 | 134.81 | wind | 5.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 983 | 134.85 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 990 | 134.87 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 994 | 134.89 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 13 |