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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0478300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.53 (0.0636) R2 : 0.0948
β1 : 0.0608 (0.224) R2dD : 0.000167 R2D : -0.0289
β2 : -- (--) R2dC : -- R2C : --
β3 : 19.9 (4.12) R2dE : 1.99 R2E : -1.42
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 46.6 (11.1) R2dD*E : 1.5 R2D*E : -1.93
γ1 : -0.337 (0.124) R2dN8 : 0.0199 R2N8 : 0.00546
σ : 1.08
deviance : 537.73
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.43
memory length : 73
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.88
open length of G : 0.992

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
525.91 1.08 3.52 0.04 0.0125 20 -2.21 45.6 -0.325 18.7 0.409 74 3.9 0.999
778.12 1.3 3.43 0.362 0.153 19.4 -3.74 -- -0.319 18.4 0.3068 74 3.61 1.3
537.11 1.08 3.53 0.0599 0.0982 19.7 -- 45.9 -0.334 12.5 0.4293 73 3.88 1
555.96 1.1 3.48 -0.269 0.0223 4.11 -- -- -0.432 11.8 2.814 70 3.6 1.31
537.73 1.08 3.53 0.0608 -- 19.9 -- 46.6 -0.337 -- 0.43 73 3.88 0.992
574.59 1.12 3.42 -0.394 0.0994 -- 1.55 -- -0.373 7.32 -- -- -- --
580.86 1.13 3.42 -0.357 0.117 -- -- -- -0.374 9.59 -- -- -- --
554.56 1.1 3.42 -0.238 -- 4.23 -- -- -0.336 -- 0.3 79 3.62 1.24
555.55 1.1 3.41 -- 0.101 4.42 -- -- -0.309 11.9 1.779 79 3.61 1.26
581.68 1.13 3.43 -0.358 -- -- -- -- -0.374 -- -- -- -- --
584.22 1.13 3.41 -- 0.118 -- -- -- -0.335 9.81 -- -- -- --
555.95 1.1 3.42 -- -- 4.45 -- -- -0.32 -- 0.3 79 3.63 1.25
585.06 1.13 3.42 -- -- -- -- -- -0.334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 542.69 radiation 1 90 > th dose independent rect. 4 1
11 542.69 radiation 1 90 > th dose dependent rect. 4 1
21 545.70 temperature 20 270 < th dose dependent rect. 16 5
23 546.03 radiation 1 10 < th dose dependent rect. 6 8
26 546.62 radiation 1 10 < th dose dependent rect. 6 6
31 547.27 temperature 20 270 < th dose independent rect. 16 5
32 547.79 temperature 25 720 < th dose dependent rect. 18 1
34 548.03 temperature 20 270 < th dose independent rect. 19 1
40 548.64 radiation 1 10 < th dose independent rect. 6 8
42 548.67 radiation 1 720 > th dose independent rect. 4 1
52 548.67 radiation 1 720 > th dose dependent rect. 4 1
63 548.87 radiation 1 10 < th dose independent rect. 7 5
68 548.90 temperature 20 720 < th dose independent rect. 12 9
69 549.04 temperature 20 720 > th dose independent rect. 13 7
81 549.82 radiation 10 10 < th dose dependent rect. 10 2
85 549.92 radiation 1 270 < th dose independent rect. 9 3
86 549.92 radiation 1 270 < th dose dependent rect. 9 3
92 550.00 radiation 1 270 < th dose independent rect. 10 1
94 550.00 radiation 1 270 < th dose dependent rect. 10 1
103 550.29 temperature 20 720 < th dose dependent rect. 8 13
115 550.53 radiation 1 10 < th dose independent rect. 11 3
135 550.71 radiation 40 720 < th dose independent rect. 24 9
161 551.23 temperature 20 720 > th dose independent rect. 7 15
170 551.46 temperature 20 30 > th dose dependent rect. 17 19
176 551.53 temperature 30 90 < th dose dependent rect. 18 12
178 551.55 humidity 80 10 < th dose dependent rect. 21 4
201 552.04 humidity 80 10 < th dose independent rect. 21 4
218 552.16 temperature 25 720 < th dose dependent sin 20 NA
221 552.17 humidity 80 90 < th dose independent rect. 22 2
225 552.25 humidity 80 1440 < th dose dependent rect. 23 1
235 552.50 wind 1 43200 < th dose dependent rect. 7 1
277 553.14 temperature 20 30 > th dose independent rect. 5 1
293 553.40 temperature 15 90 > th dose independent rect. 21 12
317 553.64 temperature 25 720 < th dose dependent rect. 5 18
334 553.83 temperature 20 720 > th dose independent sin 21 NA
339 553.86 temperature 25 10 < th dose dependent rect. 5 19
341 553.89 radiation 20 43200 > th dose dependent rect. 7 1
367 553.98 radiation 40 43200 > th dose dependent rect. 15 19
373 554.06 radiation 40 43200 > th dose dependent rect. 8 2
395 554.12 temperature 25 720 < th dose dependent rect. 12 17
397 554.14 temperature 15 720 > th dose independent rect. 20 3
398 554.15 temperature 20 720 < th dose independent sin 21 NA
399 554.16 wind 3 10 > th dose independent rect. 1 7
401 554.20 wind 3 10 > th dose independent rect. 2 4
403 554.21 radiation 40 43200 > th dose independent rect. 7 2
429 554.31 temperature 20 1440 > th dose independent rect. 13 4
432 554.34 radiation 20 43200 > th dose independent rect. 17 15
436 554.36 radiation 20 43200 > th dose independent rect. 6 2
450 554.37 radiation 1 1440 < th dose independent rect. 11 2
452 554.37 radiation 1 1440 < th dose dependent rect. 11 2
469 554.50 temperature 20 1440 > th dose dependent rect. 3 2
471 554.52 humidity 80 1440 < th dose independent rect. 23 1
529 554.61 radiation 20 43200 < th dose independent rect. 1 7
530 554.61 radiation 20 43200 < th dose independent rect. 18 14
533 554.62 radiation 20 43200 < th dose independent rect. 22 10
535 554.63 radiation 20 43200 < th dose independent rect. 6 2
536 554.63 radiation 20 43200 < th dose independent rect. 4 4
546 554.65 temperature 15 720 > th dose dependent rect. 16 2
548 554.68 radiation 40 43200 < th dose independent rect. 18 16
554 554.69 radiation 40 43200 < th dose independent rect. 7 3
560 554.69 radiation 40 43200 < th dose independent rect. 2 8
566 554.69 radiation 40 43200 < th dose independent rect. 22 12
573 554.70 radiation 40 43200 < th dose independent rect. 4 6
596 554.76 wind 1 90 > th dose dependent rect. 24 9
600 554.78 temperature 20 720 > th dose independent rect. 11 9
609 554.85 temperature 20 1440 > th dose independent rect. 13 1
665 555.03 wind 1 43200 > th dose independent rect. 16 1
668 555.03 temperature 25 30 < th dose dependent rect. 17 18
706 555.18 wind 1 43200 < th dose independent rect. 16 1
740 555.28 wind 3 10 > th dose dependent rect. 1 7
762 555.45 temperature 15 30 > th dose independent rect. 6 23
767 555.46 temperature 10 720 > th dose dependent rect. 14 4
783 555.48 temperature 15 270 > th dose dependent rect. 16 11
786 555.49 temperature 15 30 > th dose dependent rect. 17 12
792 555.52 radiation 40 43200 < th dose dependent rect. 18 14
795 555.53 radiation 40 43200 < th dose dependent rect. 7 1
826 555.65 radiation 40 43200 > th dose dependent sin 12 NA
841 555.73 wind 5 4320 < th dose independent rect. 20 1
844 555.73 radiation 40 43200 < th dose dependent rect. 2 6
846 555.73 radiation 40 43200 < th dose dependent rect. 22 10
851 555.74 radiation 40 43200 < th dose dependent rect. 4 4
896 555.80 radiation 10 43200 < th dose independent rect. 17 20
902 555.81 radiation 40 43200 < th dose independent sin 11 NA