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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0477600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha-expansin OsEXPA4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.31 (0.13) R2 : 0.562
β1 : -9.72 (0.886) R2dD : 0.925 R2D : 0.043
β2 : 1.44 (0.233) R2dC : 0.0393 R2C : -0.0196
β3 : 4.65 (0.585) R2dE : 0.289 R2E : -0.0964
β4 : -2.96 (1.03) R2dD*C : 0.0082 R2D*C : -0.0742
β5 : -17.1 (4.78) R2dD*E : 0.127 R2D*E : -0.564
γ1 : -1.98 (0.217) R2dN8 : 0.145 R2N8 : -0.00786
σ : 1.65
deviance : 1226.32
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_____
C
peak time of C : 4.78
E
wheather : temperature
threshold : 26.53
memory length : 1055
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1226.32 1.65 6.31 -9.72 1.44 4.65 -2.96 -17.1 -1.98 4.78 26.53 1055 6.5 --
1255.83 1.65 5.97 -6.74 1.47 2.73 -3.46 -- -1.58 4.64 26.51 1059 7.4 --
1244.05 1.64 6.35 -9.78 1.18 4.63 -- -16 -2.39 5.24 25.55 1043 7.18 --
1285.76 1.67 5.96 -6.8 1.5 2.65 -- -- -1.63 4.94 26.29 1076 8.81 --
1294.23 1.68 6.41 -9.44 -- 4.66 -- -11.7 -2.88 -- 23.7 993 7.53 --
1514.72 1.82 6 -6.15 2.04 -- -2.45 -- -1.74 4.13 -- -- -- --
1531.75 1.83 6 -6.12 2.03 -- -- -- -1.73 4.13 -- -- -- --
1348.15 1.71 6.13 -6.87 -- 3.66 -- -- -2.22 -- 23.34 943 7.64 --
2421.35 2.29 5.79 -- 1.77 1.45 -- -- -0.79 4.43 33.5 966 8.41 --
1754.94 1.96 6 -6.04 -- -- -- -- -1.67 -- -- -- -- --
2519.22 2.35 5.84 -- 1.91 -- -- -- -1.04 4.18 -- -- -- --
2549.74 2.35 5.93 -- -- 2.31 -- -- -1.34 -- 22.35 851 7.38 --
2716.94 2.43 5.85 -- -- -- -- -- -1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1202.89 wind 7 43200 > th dose dependent rect. 5 10
2 1202.97 humidity 80 43200 < th dose dependent rect. 22 1
9 1204.51 radiation 10 43200 > th dose independent rect. 10 1
18 1207.32 wind 7 43200 > th dose dependent rect. 24 16
23 1208.42 wind 9 43200 > th dose independent rect. 18 21
33 1211.24 wind 9 43200 < th dose independent rect. 5 10
36 1211.63 wind 9 43200 > th dose independent rect. 8 7
40 1211.89 wind 9 43200 < th dose independent rect. 7 8
42 1212.20 wind 9 43200 < th dose independent rect. 2 13
43 1212.35 wind 9 43200 < th dose independent rect. 18 21
46 1212.52 wind 7 43200 > th dose dependent sin 1 NA
61 1214.17 wind 9 43200 > th dose independent rect. 2 13
64 1214.54 wind 9 43200 > th dose independent rect. 24 15
114 1218.64 wind 7 43200 > th dose dependent rect. 13 1
189 1224.13 wind 7 43200 > th dose dependent rect. 18 22
215 1225.45 radiation 40 43200 < th dose independent rect. 10 1
222 1225.89 radiation 40 43200 > th dose dependent rect. 10 1
240 1226.91 humidity 80 43200 < th dose dependent rect. 3 1
270 1228.44 wind 9 43200 > th dose independent rect. 2 19
271 1228.47 wind 9 43200 > th dose independent rect. 23 22
272 1228.49 wind 9 43200 > th dose independent rect. 4 17
302 1229.18 wind 9 43200 > th dose independent rect. 13 22
322 1229.62 wind 9 43200 > th dose independent sin 0 NA
326 1229.66 wind 9 43200 < th dose independent rect. 13 22
338 1229.92 wind 9 43200 < th dose independent sin 1 NA
340 1229.93 wind 9 43200 < th dose independent rect. 4 17
343 1230.02 wind 9 43200 < th dose independent rect. 2 19
363 1230.55 wind 9 43200 > th dose dependent rect. 13 19
368 1230.67 wind 9 43200 < th dose independent rect. 23 22
409 1231.76 wind 9 43200 < th dose independent rect. 13 2
425 1232.34 wind 7 43200 > th dose dependent no NA NA
427 1232.38 radiation 30 1440 > th dose independent rect. 16 16
450 1232.89 wind 7 43200 > th dose dependent rect. 7 23
458 1233.18 wind 7 43200 > th dose dependent rect. 10 23
477 1233.53 wind 9 43200 > th dose independent rect. 2 23
485 1233.61 wind 9 43200 > th dose independent rect. 4 21
486 1233.61 wind 7 43200 > th dose dependent rect. 13 23
534 1234.72 wind 9 43200 > th dose independent no NA NA
546 1235.02 wind 9 43200 > th dose independent rect. 7 23
605 1236.01 radiation 40 43200 > th dose independent rect. 10 1
665 1237.11 humidity 80 43200 < th dose independent rect. 24 1
743 1238.88 wind 9 43200 < th dose independent no NA NA
766 1239.24 wind 9 43200 > th dose independent rect. 13 2
773 1239.35 wind 9 43200 < th dose independent rect. 7 23
814 1240.07 humidity 50 1440 < th dose dependent rect. 16 1
825 1240.23 humidity 50 1440 < th dose independent rect. 16 1
844 1240.51 humidity 80 43200 > th dose independent rect. 1 1
916 1241.80 humidity 50 1440 > th dose independent rect. 16 1
940 1242.28 humidity 80 43200 > th dose independent rect. 22 7
942 1242.29 humidity 80 43200 > th dose independent rect. 24 4
963 1242.57 radiation 30 1440 > th dose independent rect. 7 1
986 1242.74 humidity 80 43200 > th dose independent rect. 3 1