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Os05g0475700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nodulin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0372) R2 : 0.733
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.04 (0.0866) R2dE : 0.722 R2E : 0.722
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.292 (0.0784) R2dN8 : 0.0105 R2N8 : 0.0111
σ : 0.699
deviance : 225.45
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.9974
memory length : 1211
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.5
open length of G : 11.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.72 0.642 10.6 -0.43 6.16 3.59 0.178 2.17 0.299 12.9 0.000277 283 18.8 11.2
190.7 0.643 10.6 -0.439 6.16 3.62 -2.03 -- 0.311 12.9 0.007266 298 18.7 11.1
186.08 0.635 10.6 -0.452 6.17 3.61 -- 2.04 0.293 12.9 0.4998 295 18.7 11.2
207.83 0.671 10.6 -0.461 6.23 3.69 -- -- 0.282 12.9 0.3328 301 18.7 11.1
247.14 0.732 10.7 -0.375 -- 3.11 -- 1.59 0.259 -- 0.9977 1156 18.7 11.9
246.06 0.735 10.6 -0.516 3.08 -- -0.907 -- 0.286 10.1 -- -- -- --
249.22 0.739 10.6 -0.553 3.09 -- -- -- 0.283 10.1 -- -- -- --
220.42 0.691 10.7 -0.568 -- 2.94 -- -- 0.219 -- 0.7379 1179 18.9 11.3
213.9 0.681 10.6 -- 6.27 3.72 -- -- 0.338 12.9 0.2951 298 18.7 11.1
824.76 1.34 10.7 -0.593 -- -- -- -- 0.28 -- -- -- -- --
257.3 0.75 10.6 -- 3.09 -- -- -- 0.345 10.1 -- -- -- --
225.45 0.699 10.7 -- -- 3.04 -- -- 0.292 -- 0.9974 1211 18.5 11.6
834.03 1.35 10.7 -- -- -- -- -- 0.346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.54 precipitation 0.1 270 < th dose independent rect. 19 11
2 188.54 precipitation 0.1 270 < th dose dependent rect. 19 11
3 190.00 precipitation 0.1 720 < th dose independent rect. 18 14
4 190.00 precipitation 0.1 720 < th dose dependent rect. 18 14
5 191.93 precipitation 0.1 720 < th dose independent rect. 11 19
6 191.93 precipitation 0.1 720 < th dose dependent rect. 11 19
9 193.83 precipitation 0.1 720 < th dose independent rect. 4 17
10 193.83 precipitation 0.1 720 < th dose dependent rect. 4 17
13 195.65 radiation 40.0 720 < th dose dependent rect. 16 10
14 195.83 precipitation 0.1 720 < th dose independent rect. 13 17
15 195.83 precipitation 0.1 720 < th dose dependent rect. 13 17
16 195.88 precipitation 0.1 720 < th dose independent rect. 2 14
17 195.88 precipitation 0.1 720 < th dose dependent rect. 2 14
18 196.10 humidity 50.0 270 > th dose dependent rect. 15 18
20 196.50 wind 7.0 270 < th dose independent rect. 19 11
22 196.55 humidity 60.0 270 > th dose independent rect. 19 11
23 196.59 temperature 10.0 270 > th dose independent rect. 19 11
24 196.59 temperature 30.0 270 < th dose independent rect. 19 11
26 196.59 atmosphere 995.0 270 > th dose independent rect. 19 11
27 196.59 radiation 20.0 270 < th dose independent rect. 19 11
30 196.59 temperature 10.0 270 > th dose independent rect. 6 13
31 196.59 atmosphere 1015.0 270 < th dose independent rect. 6 13
32 196.65 precipitation 0.1 270 < th dose independent rect. 10 13
33 196.65 precipitation 0.1 270 < th dose dependent rect. 10 13
34 196.72 wind 9.0 270 < th dose independent rect. 6 13
36 196.91 radiation 40.0 270 < th dose dependent rect. 19 11
44 197.21 radiation 1.0 720 > th dose independent rect. 10 6
48 197.39 precipitation 0.1 720 < th dose independent rect. 18 5
49 197.39 precipitation 0.1 720 < th dose dependent rect. 18 5
50 197.41 precipitation 0.1 720 < th dose independent rect. 19 19
51 197.41 precipitation 0.1 720 < th dose dependent rect. 19 19
56 197.82 radiation 40.0 720 < th dose dependent rect. 15 4
57 197.87 wind 1.0 270 > th dose independent rect. 20 10
65 198.78 precipitation 0.1 720 < th dose independent rect. 4 10
66 198.78 precipitation 0.1 720 < th dose dependent rect. 4 10
68 199.02 precipitation 0.1 720 < th dose independent rect. 3 20
69 199.02 precipitation 0.1 720 < th dose dependent rect. 3 20
102 199.71 radiation 20.0 720 < th dose independent rect. 16 10
103 199.77 radiation 1.0 720 < th dose independent rect. 14 13
104 199.81 atmosphere 1015.0 270 < th dose independent rect. 23 11
111 200.07 humidity 50.0 720 > th dose dependent rect. 23 3
116 200.25 humidity 50.0 270 > th dose independent rect. 23 11
117 200.31 temperature 10.0 270 > th dose independent rect. 23 11
118 200.31 atmosphere 995.0 270 > th dose independent rect. 23 11
119 200.31 temperature 10.0 270 > th dose independent rect. 10 13
120 200.39 precipitation 0.1 720 < th dose independent rect. 18 7
121 200.39 precipitation 0.1 720 < th dose dependent rect. 18 7
122 200.41 wind 9.0 270 < th dose independent rect. 23 11
141 200.90 temperature 10.0 270 > th dose dependent rect. 23 11
143 201.09 temperature 10.0 720 > th dose independent rect. 16 10
146 201.09 temperature 10.0 720 > th dose independent rect. 2 14
147 201.12 wind 1.0 270 > th dose independent rect. 10 13
148 201.12 radiation 40.0 720 < th dose independent rect. 14 14
150 201.28 temperature 10.0 720 > th dose independent rect. 4 10
151 201.28 atmosphere 995.0 720 > th dose independent rect. 4 10
152 201.28 atmosphere 1015.0 720 < th dose independent rect. 4 10
154 201.28 temperature 10.0 720 > th dose independent rect. 14 14
155 201.29 humidity 80.0 720 > th dose independent rect. 23 3
159 201.36 wind 7.0 720 < th dose independent rect. 18 14
160 201.41 temperature 20.0 90 > th dose independent rect. 1 10
162 201.43 temperature 10.0 90 > th dose dependent rect. 1 10
174 201.90 radiation 40.0 720 < th dose independent rect. 14 5
184 202.09 radiation 1.0 720 < th dose dependent rect. 14 13
186 202.28 wind 7.0 720 < th dose independent rect. 2 5
189 202.35 precipitation 0.1 720 < th dose independent rect. 2 5
190 202.35 precipitation 0.1 720 < th dose dependent rect. 2 5
195 202.54 precipitation 0.1 270 < th dose independent rect. 23 11
196 202.54 precipitation 0.1 270 < th dose dependent rect. 23 11
210 202.79 atmosphere 995.0 270 > th dose independent rect. 10 13
213 202.89 humidity 50.0 720 > th dose dependent rect. 22 5
214 202.98 wind 1.0 270 > th dose independent rect. 6 13
230 203.11 temperature 10.0 720 > th dose independent rect. 8 10
231 203.11 atmosphere 1015.0 720 < th dose independent rect. 8 10
232 203.11 temperature 10.0 720 > th dose independent rect. 18 14
233 203.11 humidity 50.0 720 > th dose independent rect. 18 14
235 203.18 atmosphere 1015.0 90 < th dose dependent rect. 18 17
253 203.48 radiation 40.0 720 < th dose independent rect. 18 14
267 203.67 temperature 30.0 270 < th dose independent rect. 23 11
268 203.71 precipitation 0.1 720 < th dose independent rect. 13 9
269 203.71 precipitation 0.1 720 < th dose dependent rect. 13 9
277 203.78 wind 9.0 270 < th dose independent rect. 10 13
278 203.78 precipitation 0.1 270 < th dose independent rect. 6 13
280 203.78 precipitation 0.1 270 < th dose dependent rect. 6 13
295 204.11 wind 7.0 720 < th dose independent rect. 18 5
324 204.59 temperature 25.0 720 < th dose independent rect. 23 4
327 204.70 wind 9.0 720 < th dose independent rect. 4 10
328 204.71 atmosphere 995.0 720 > th dose independent rect. 18 14
334 204.82 temperature 10.0 720 > th dose independent rect. 2 5
335 204.82 temperature 30.0 720 < th dose independent rect. 2 5
336 204.82 humidity 50.0 720 > th dose independent rect. 2 5
338 204.82 atmosphere 995.0 720 > th dose independent rect. 2 5
339 204.82 radiation 40.0 720 < th dose independent rect. 2 5
340 204.82 temperature 10.0 720 > th dose independent rect. 7 19
344 204.87 humidity 90.0 270 < th dose independent rect. 10 13
356 205.06 temperature 10.0 720 > th dose independent rect. 14 5
357 205.06 atmosphere 1015.0 720 < th dose independent rect. 14 5
358 205.06 temperature 10.0 720 > th dose independent rect. 19 19
359 205.06 atmosphere 995.0 720 > th dose independent rect. 19 19
361 205.11 precipitation 0.1 720 < th dose independent rect. 7 20
363 205.11 precipitation 0.1 720 < th dose dependent rect. 7 20
370 205.27 precipitation 0.1 720 < th dose independent rect. 19 2
372 205.27 precipitation 0.1 720 < th dose dependent rect. 19 2
375 205.29 radiation 40.0 720 < th dose dependent rect. 3 4
390 205.47 precipitation 0.1 720 < th dose independent rect. 10 6
391 205.47 precipitation 0.1 720 < th dose dependent rect. 10 6
393 205.52 precipitation 0.1 720 < th dose independent rect. 11 4
394 205.52 precipitation 0.1 720 < th dose dependent rect. 11 4
398 205.59 temperature 10.0 720 > th dose independent rect. 11 4
399 205.59 atmosphere 1015.0 720 < th dose independent rect. 11 4
400 205.59 temperature 10.0 720 > th dose independent rect. 15 20
401 205.60 temperature 10.0 720 > th dose independent rect. 10 6
402 205.60 atmosphere 1015.0 720 < th dose independent rect. 10 6
403 205.60 temperature 10.0 720 > th dose independent rect. 16 18
416 205.65 wind 9.0 720 < th dose independent rect. 2 14
422 205.67 wind 7.0 720 < th dose independent rect. 6 5
432 205.74 humidity 50.0 720 > th dose independent rect. 6 5
436 205.76 temperature 20.0 720 > th dose independent rect. 6 5
440 205.78 atmosphere 1015.0 270 < th dose independent rect. 2 13
452 205.87 atmosphere 995.0 270 > th dose independent rect. 2 13
456 205.90 precipitation 0.1 720 < th dose independent rect. 23 4
458 205.90 precipitation 0.1 720 < th dose dependent rect. 23 4
463 205.92 atmosphere 995.0 720 > th dose independent rect. 11 4
465 205.93 temperature 30.0 270 < th dose independent rect. 11 3
466 205.93 humidity 60.0 270 > th dose independent rect. 15 18
475 205.96 temperature 10.0 720 > th dose independent rect. 23 4
477 205.96 humidity 50.0 720 > th dose independent rect. 23 4
480 205.96 atmosphere 995.0 720 > th dose independent rect. 23 4
481 205.96 radiation 1.0 720 < th dose independent rect. 23 4
486 205.96 temperature 10.0 720 > th dose independent rect. 3 20
487 205.96 radiation 1.0 720 < th dose dependent rect. 23 4
496 205.99 atmosphere 1000.0 90 > th dose independent rect. 1 10
498 206.01 temperature 10.0 720 > th dose independent rect. 22 6
499 206.01 temperature 30.0 720 < th dose independent rect. 22 6
500 206.01 humidity 50.0 720 > th dose independent rect. 22 6
503 206.01 atmosphere 995.0 720 > th dose independent rect. 22 6
504 206.01 radiation 1.0 720 < th dose independent rect. 22 6
509 206.01 temperature 10.0 720 > th dose independent rect. 4 18
510 206.01 radiation 1.0 720 < th dose dependent rect. 22 6
523 206.09 temperature 10.0 720 > th dose dependent rect. 23 3
536 206.13 wind 9.0 720 < th dose independent rect. 23 4
583 206.41 wind 9.0 90 < th dose independent rect. 16 19
595 206.53 wind 9.0 720 < th dose independent rect. 22 6
624 206.64 temperature 25.0 720 < th dose independent rect. 14 13
631 206.65 wind 1.0 720 > th dose independent rect. 11 4
632 206.65 humidity 60.0 14400 > th dose independent rect. 21 10
635 206.66 radiation 1.0 90 > th dose independent rect. 11 19
644 206.72 wind 1.0 270 < th dose independent rect. 23 2
650 206.76 wind 9.0 720 < th dose independent rect. 19 19
653 206.78 precipitation 0.1 720 < th dose independent rect. 15 20
654 206.78 radiation 40.0 720 < th dose dependent rect. 16 1
655 206.78 precipitation 0.1 720 < th dose dependent rect. 15 20
665 206.87 wind 1.0 720 > th dose independent rect. 14 5
686 206.94 precipitation 0.1 720 < th dose independent rect. 6 5
687 206.94 precipitation 0.1 720 < th dose dependent rect. 6 5
688 206.95 precipitation 0.1 720 < th dose independent rect. 14 5
691 206.95 precipitation 0.1 720 < th dose dependent rect. 14 5
701 206.98 humidity 90.0 90 < th dose independent rect. 11 19
702 206.99 temperature 10.0 90 > th dose independent rect. 11 5
703 206.99 atmosphere 1015.0 90 < th dose independent rect. 11 5
705 206.99 temperature 10.0 90 > th dose independent rect. 16 19
709 207.01 wind 9.0 720 < th dose independent rect. 16 10
710 207.02 temperature 10.0 720 > th dose independent rect. 6 5
711 207.02 atmosphere 995.0 720 > th dose independent rect. 6 5
712 207.02 atmosphere 1015.0 720 < th dose independent rect. 6 5
713 207.02 temperature 10.0 720 > th dose independent rect. 11 19
717 207.05 radiation 40.0 270 < th dose independent rect. 15 18
720 207.06 atmosphere 1015.0 720 < th dose independent rect. 16 10
723 207.07 precipitation 0.1 90 < th dose independent rect. 11 5
724 207.07 humidity 50.0 720 > th dose independent rect. 19 19
725 207.07 precipitation 0.1 90 < th dose dependent rect. 11 5
726 207.08 atmosphere 995.0 90 > th dose independent rect. 11 5
727 207.08 temperature 10.0 90 > th dose independent rect. 1 10
729 207.08 atmosphere 1015.0 90 < th dose independent rect. 1 10
736 207.12 humidity 50.0 720 > th dose dependent rect. 16 10
740 207.14 atmosphere 1015.0 720 < th dose independent rect. 23 19
742 207.16 humidity 90.0 720 < th dose independent rect. 20 1
745 207.17 humidity 50.0 90 > th dose independent rect. 1 10
760 207.23 atmosphere 995.0 90 > th dose independent rect. 16 19
781 207.36 atmosphere 1015.0 90 < th dose independent rect. 16 19
785 207.38 humidity 50.0 720 > th dose independent rect. 11 3
797 207.43 wind 1.0 90 > th dose independent rect. 11 5
819 207.47 wind 9.0 720 < th dose independent rect. 11 19
830 207.53 humidity 50.0 270 > th dose independent rect. 10 5
834 207.54 temperature 10.0 720 > th dose independent rect. 18 5
835 207.54 humidity 50.0 720 > th dose independent rect. 18 5
836 207.54 radiation 20.0 720 < th dose independent rect. 18 5
839 207.54 temperature 10.0 720 > th dose independent rect. 23 19
844 207.58 wind 1.0 720 > th dose independent rect. 10 6
849 207.59 radiation 40.0 720 < th dose dependent rect. 18 5
853 207.60 temperature 30.0 270 < th dose independent rect. 15 18
894 207.73 humidity 50.0 270 > th dose independent rect. 2 13
903 207.78 atmosphere 1010.0 30 < th dose dependent sin 9 NA
914 207.85 humidity 60.0 14400 > th dose independent rect. 23 9
926 207.92 wind 9.0 270 < th dose independent rect. 14 21
930 207.95 precipitation 0.1 90 < th dose independent rect. 1 10
934 207.95 precipitation 0.1 90 < th dose dependent rect. 1 10
938 207.97 atmosphere 995.0 270 > th dose independent rect. 6 14
939 207.98 temperature 10.0 10 > th dose dependent rect. 1 11
970 208.07 radiation 1.0 270 < th dose dependent rect. 19 18
977 208.11 radiation 1.0 720 > th dose independent rect. 10 20
978 208.11 humidity 50.0 270 > th dose independent rect. 14 21
983 208.13 precipitation 0.1 720 < th dose independent rect. 22 6
984 208.13 precipitation 0.1 720 < th dose dependent rect. 22 6
985 208.15 wind 1.0 720 > th dose independent rect. 18 5