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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0474800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WRKY transcription factor 70.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.29 (0.0558) R2 : 0.43
β1 : 2.1 (0.207) R2dD : 0.143 R2D : 0.00808
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.99 (0.229) R2dE : 0.455 R2E : 0.254
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.733 (0.126) R2dN8 : 0.0658 R2N8 : -0.08
σ : 1.03
deviance : 484.5
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.22
memory length : 2
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
454.04 1 4.35 1.63 0.272 4.04 1.46 3.09 0.612 20.4 27.95 3 -- --
465.89 1.01 4.3 2.13 0.315 3.81 1.9 -- 0.699 22.1 28.15 5 -- --
459.5 0.998 4.36 1.47 0.299 3.92 -- 3.52 0.565 22.3 27.71 2 -- --
479.56 1.02 4.3 2.06 0.305 3.81 -- -- 0.7 22.4 28.14 2 -- --
464.19 1 4.35 1.5 -- 4.08 -- 3.58 0.6 -- 27.77 2 -- --
673.47 1.22 4.49 1.2 1.41 -- 1.77 -- -0.0951 1.17 -- -- -- --
686.13 1.23 4.49 1.14 1.41 -- -- -- -0.106 1.37 -- -- -- --
484.5 1.03 4.29 2.1 -- 3.99 -- -- 0.733 -- 28.22 2 -- --
580.21 1.12 4.39 -- 0.543 2.98 -- -- 0.324 0.369 27.93 2 -- --
808.6 1.33 4.47 1.2 -- -- -- -- -0.0765 -- -- -- -- --
720.43 1.26 4.52 -- 1.43 -- -- -- -0.233 1.4 -- -- -- --
593.86 1.13 4.37 -- -- 3.4 -- -- 0.387 -- 28.43 2 -- --
846.34 1.36 4.5 -- -- -- -- -- -0.209 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 453.35 temperature 30 90 < th dose dependent rect. 11 23
3 457.08 temperature 30 10 < th dose dependent rect. 13 23
4 459.28 temperature 30 30 < th dose dependent rect. 9 23
8 461.93 temperature 30 10 < th dose dependent no NA NA
9 462.10 temperature 30 10 < th dose dependent rect. 1 23
10 462.25 temperature 30 10 < th dose dependent rect. 17 23
11 462.56 temperature 20 1440 > th dose dependent rect. 15 3
12 462.64 temperature 30 10 < th dose dependent rect. 11 23
16 463.41 temperature 20 1440 > th dose dependent rect. 13 5
18 463.55 temperature 30 30 < th dose dependent rect. 15 23
26 464.59 temperature 20 1440 > th dose dependent rect. 11 7
32 465.35 temperature 30 30 < th dose dependent rect. 5 23
38 465.71 temperature 30 30 < th dose dependent rect. 3 23
43 466.07 temperature 30 30 < th dose dependent rect. 19 23
48 466.49 temperature 10 1440 > th dose dependent rect. 11 7
91 468.38 temperature 25 1440 < th dose independent rect. 11 14
95 468.71 temperature 25 1440 > th dose independent rect. 11 14
118 469.56 temperature 20 720 > th dose dependent rect. 11 16
127 469.79 temperature 20 1440 > th dose dependent rect. 13 1
164 470.82 temperature 30 10 < th dose dependent rect. 21 23
178 471.05 temperature 25 1440 > th dose independent sin 18 NA
180 471.07 temperature 30 10 < th dose dependent rect. 23 23
188 471.27 temperature 25 1440 < th dose independent sin 18 NA
190 471.32 temperature 20 1440 > th dose dependent sin 19 NA
301 473.55 temperature 20 720 > th dose dependent rect. 13 19
364 474.52 temperature 25 720 > th dose independent rect. 5 19
386 474.87 temperature 30 1440 < th dose dependent rect. 11 9
437 475.58 temperature 30 1440 < th dose dependent rect. 13 7
448 475.73 temperature 30 1440 < th dose dependent rect. 16 2
449 475.73 temperature 30 10 < th dose dependent rect. 7 23
461 476.00 temperature 30 1440 < th dose dependent rect. 15 4
495 476.47 temperature 15 10 > th dose dependent no NA NA
559 477.15 temperature 30 720 < th dose dependent rect. 9 15
626 477.77 temperature 30 720 < th dose dependent rect. 7 17
684 478.49 temperature 20 720 > th dose dependent rect. 13 23
689 478.61 temperature 30 720 < th dose dependent sin 18 NA
781 479.59 temperature 25 1440 > th dose independent rect. 11 21
798 479.87 temperature 20 720 > th dose dependent no NA NA