Os05g0471000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ser-thr protein kinase (Fragment).
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Os05g0471000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ser-thr protein kinase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.98 | 0.339 | 8.72 | -0.305 | 1.29 | 2.19 | 0.174 | -0.418 | 0.193 | 13.9 | 2.109 | 698 | -- | -- |
| 52.15 | 0.336 | 8.72 | -0.324 | 1.35 | 2.23 | 0.355 | -- | 0.191 | 14 | 2.103 | 689 | -- | -- |
| 52.02 | 0.336 | 8.71 | -0.299 | 1.3 | 2.15 | -- | -0.545 | 0.196 | 13.8 | 2.177 | 689 | -- | -- |
| 52.55 | 0.338 | 8.72 | -0.316 | 1.31 | 2.16 | -- | -- | 0.189 | 13.8 | 2.073 | 691 | -- | -- |
| 57.47 | 0.353 | 8.72 | -0.239 | -- | 2.27 | -- | -0.186 | 0.238 | -- | 1.924 | 1039 | -- | -- |
| 61.52 | 0.368 | 8.71 | -0.458 | 1.48 | -- | -0.112 | -- | 0.0914 | 8.52 | -- | -- | -- | -- |
| 61.56 | 0.367 | 8.71 | -0.462 | 1.48 | -- | -- | -- | 0.0914 | 8.52 | -- | -- | -- | -- |
| 57.39 | 0.353 | 8.71 | -0.222 | -- | 2.27 | -- | -- | 0.245 | -- | 1.782 | 1041 | -- | -- |
| 54.97 | 0.345 | 8.71 | -- | 1.46 | 2.44 | -- | -- | 0.231 | 14.4 | 1.815 | 691 | -- | -- |
| 184.89 | 0.635 | 8.74 | -0.456 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 67.17 | 0.383 | 8.69 | -- | 1.48 | -- | -- | -- | 0.143 | 8.55 | -- | -- | -- | -- |
| 58.64 | 0.357 | 8.71 | -- | -- | 2.3 | -- | -- | 0.269 | -- | 1.576 | 1042 | -- | -- |
| 190.36 | 0.644 | 8.73 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.00 | radiation | 1.0 | 720 | < th | dose independent | sin | 13 | NA |
| 2 | 50.19 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 3 | 50.20 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 4 | 50.22 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 16 |
| 5 | 50.24 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 14 |
| 8 | 50.37 | radiation | 1.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 20 | 50.81 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 22 |
| 23 | 50.83 | radiation | 1.0 | 720 | > th | dose independent | sin | 13 | NA |
| 40 | 51.06 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 43 | 51.09 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 22 |
| 60 | 51.33 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 18 |
| 65 | 51.37 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 72 | 51.53 | radiation | 1.0 | 720 | > th | dose independent | rect. | 14 | 16 |
| 88 | 51.68 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 99 | 51.74 | radiation | 1.0 | 720 | < th | dose independent | rect. | 2 | 17 |
| 123 | 51.88 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 6 |
| 140 | 51.91 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 23 |
| 147 | 51.96 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 163 | 52.13 | radiation | 1.0 | 720 | < th | dose independent | no | NA | NA |
| 168 | 52.16 | radiation | 1.0 | 720 | > th | dose independent | rect. | 5 | 14 |
| 181 | 52.20 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 280 | 52.40 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 22 |
| 281 | 52.40 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 282 | 52.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 17 |
| 302 | 52.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 306 | 52.57 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 339 | 52.77 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 369 | 52.94 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 370 | 52.94 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 16 |
| 372 | 52.94 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 375 | 52.95 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 23 |
| 379 | 52.96 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 388 | 53.00 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 10 |
| 390 | 53.00 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 399 | 53.03 | radiation | 1.0 | 720 | < th | dose independent | sin | 2 | NA |
| 412 | 53.06 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 422 | 53.11 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 430 | 53.17 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 18 |
| 432 | 53.17 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 433 | 53.17 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 18 |
| 455 | 53.31 | radiation | 1.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 470 | 53.40 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 10 |
| 472 | 53.41 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 14 |
| 497 | 53.48 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 6 | 19 |
| 498 | 53.48 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 500 | 53.49 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 510 | 53.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 513 | 53.54 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 521 | 53.59 | radiation | 1.0 | 720 | > th | dose independent | sin | 23 | NA |
| 537 | 53.62 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 19 |
| 545 | 53.67 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 17 |
| 562 | 53.74 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 582 | 53.78 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 608 | 53.86 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 643 | 53.94 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 649 | 53.96 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 655 | 53.98 | temperature | 20.0 | 90 | > th | dose dependent | sin | 10 | NA |
| 667 | 54.01 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 691 | 54.08 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 694 | 54.09 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 12 |
| 712 | 54.13 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 19 |
| 713 | 54.13 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 714 | 54.13 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 721 | 54.16 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 748 | 54.21 | temperature | 30.0 | 30 | < th | dose dependent | sin | 9 | NA |
| 766 | 54.26 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 825 | 54.42 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 7 |
| 842 | 54.45 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 870 | 54.49 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 906 | 54.55 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 907 | 54.55 | temperature | 10.0 | 30 | > th | dose dependent | sin | 9 | NA |
| 909 | 54.55 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 918 | 54.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 927 | 54.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 14 |
| 935 | 54.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 14 |
| 939 | 54.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 14 |
| 954 | 54.61 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 959 | 54.62 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 962 | 54.63 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 982 | 54.65 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 984 | 54.65 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 11 |
| 987 | 54.65 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 1000 | 54.67 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 18 |