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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0469900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0312) R2 : 0.000544
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0328 (0.0658) R2dN8 : 0.000703 R2N8 : 0.000544
σ : 0.588
deviance : 158.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.33 0.572 2.9 -0.0745 0.246 0.333 -0.122 -1.99 0.119 8.02 64.61 4525 -- --
150.1 0.571 2.93 -0.0599 0.26 0.478 0.0174 -- 0.043 7.98 55.91 10250 -- --
148.37 0.567 2.9 -0.0762 0.246 0.335 -- -1.99 0.118 7.97 64.58 4525 -- --
149.91 0.57 2.92 -0.0914 0.253 0.459 -- -- 0.0353 8.47 55.94 10272 -- --
151.58 0.573 2.91 -0.0699 -- 0.358 -- -2.03 0.132 -- 64.27 4462 -- --
154.42 0.583 2.92 -0.159 0.257 -- -0.182 -- 0.0123 8.61 -- -- -- --
154.52 0.582 2.92 -0.165 0.259 -- -- -- 0.0121 8.48 -- -- -- --
153.63 0.577 2.92 -0.0956 -- 0.454 -- -- 0.0374 -- 55 10265 -- --
150.13 0.571 2.92 -- 0.257 0.476 -- -- 0.0443 8.5 55 10272 -- --
158.26 0.588 2.93 -0.164 -- -- -- -- 0.0146 -- -- -- -- --
155.24 0.583 2.92 -- 0.258 -- -- -- 0.0305 8.53 -- -- -- --
153.84 0.578 2.92 -- -- 0.483 -- -- 0.0439 -- 55.94 10265 -- --
158.96 0.588 2.93 -- -- -- -- -- 0.0328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.07 radiation 1.0 270 < th dose independent rect. 8 3
2 139.07 radiation 1.0 270 < th dose dependent rect. 8 3
23 143.57 wind 7.0 1440 > th dose independent rect. 3 1
25 143.57 wind 7.0 1440 > th dose dependent rect. 3 1
37 144.00 wind 1.0 10 < th dose dependent rect. 24 2
48 144.51 humidity 60.0 4320 < th dose dependent rect. 16 1
58 144.71 radiation 1.0 14400 > th dose independent rect. 9 2
60 144.90 radiation 1.0 14400 < th dose independent rect. 9 2
82 145.45 wind 1.0 10 < th dose independent rect. 24 2
86 145.54 radiation 10.0 4320 < th dose dependent rect. 18 11
97 145.71 radiation 1.0 4320 < th dose dependent rect. 24 5
104 145.82 radiation 40.0 4320 < th dose dependent rect. 18 7
113 145.93 radiation 1.0 4320 < th dose dependent rect. 3 2
123 146.06 radiation 1.0 14400 < th dose dependent rect. 9 1
137 146.19 radiation 40.0 14400 < th dose independent rect. 16 9
152 146.20 humidity 60.0 4320 < th dose independent rect. 16 1
155 146.23 humidity 60.0 4320 < th dose independent rect. 15 3
177 146.29 humidity 60.0 4320 > th dose independent rect. 15 4
180 146.32 humidity 60.0 4320 > th dose independent rect. 15 10
181 146.33 humidity 60.0 14400 > th dose independent rect. 21 9
183 146.33 humidity 60.0 4320 > th dose independent rect. 15 14
184 146.33 humidity 60.0 4320 > th dose independent rect. 15 17
198 146.35 wind 9.0 43200 > th dose dependent rect. 11 1
229 146.40 radiation 10.0 43200 < th dose dependent rect. 17 12
231 146.43 radiation 1.0 720 > th dose independent rect. 4 1
243 146.43 radiation 1.0 720 > th dose dependent rect. 4 1
246 146.43 radiation 10.0 4320 < th dose dependent rect. 18 3
254 146.44 temperature 15.0 14400 > th dose independent rect. 9 2
266 146.45 radiation 40.0 4320 < th dose dependent rect. 4 1
269 146.46 wind 1.0 43200 > th dose independent rect. 20 1
271 146.46 radiation 10.0 4320 < th dose dependent rect. 18 1
284 146.47 radiation 40.0 43200 < th dose dependent rect. 17 8
295 146.51 humidity 50.0 43200 < th dose dependent rect. 15 3
296 146.51 radiation 40.0 43200 < th dose dependent rect. 17 4
299 146.52 radiation 20.0 43200 < th dose dependent rect. 17 2
375 146.62 wind 9.0 43200 < th dose independent rect. 11 1
411 146.68 temperature 25.0 10 < th dose independent rect. 8 7
426 146.73 wind 9.0 43200 > th dose independent rect. 11 1
486 146.80 wind 1.0 43200 < th dose independent rect. 20 1
499 146.87 radiation 20.0 4320 > th dose dependent rect. 16 1
528 146.91 humidity 70.0 43200 < th dose independent rect. 20 1
538 146.92 humidity 70.0 4320 < th dose dependent sin 13 NA
545 146.92 radiation 1.0 43200 > th dose dependent rect. 17 12
563 146.97 radiation 1.0 43200 > th dose dependent rect. 17 2
574 146.99 humidity 70.0 43200 > th dose independent rect. 20 1
579 147.02 humidity 60.0 4320 > th dose independent sin 13 NA
580 147.02 humidity 60.0 4320 < th dose independent sin 13 NA
595 147.04 temperature 15.0 14400 < th dose independent rect. 9 2
597 147.04 radiation 1.0 1440 < th dose independent rect. 18 11
646 147.11 radiation 30.0 43200 > th dose dependent rect. 15 1
673 147.14 radiation 40.0 14400 < th dose independent rect. 16 5
677 147.15 humidity 50.0 43200 < th dose dependent rect. 15 20
693 147.19 wind 9.0 4320 > th dose independent rect. 14 3
699 147.20 radiation 40.0 43200 < th dose dependent rect. 4 1
706 147.22 radiation 40.0 43200 < th dose dependent rect. 22 7
745 147.28 temperature 15.0 14400 < th dose dependent rect. 4 1
803 147.35 radiation 20.0 43200 > th dose independent rect. 17 1
819 147.35 radiation 20.0 43200 > th dose dependent rect. 17 1
831 147.35 radiation 40.0 43200 < th dose dependent rect. 20 9
837 147.36 radiation 20.0 43200 < th dose independent rect. 6 1
840 147.36 temperature 25.0 10 > th dose independent rect. 5 15
841 147.36 humidity 50.0 43200 < th dose independent rect. 15 21
846 147.37 radiation 40.0 43200 < th dose independent rect. 16 14
882 147.42 precipitation 0.1 14400 < th dose independent rect. 4 1
885 147.42 precipitation 0.1 14400 < th dose dependent rect. 4 1
920 147.44 radiation 40.0 14400 < th dose independent rect. 16 3
927 147.45 radiation 20.0 43200 < th dose independent rect. 22 9
928 147.45 radiation 20.0 43200 < th dose independent rect. 20 11
933 147.46 radiation 1.0 43200 < th dose independent rect. 4 1
935 147.46 radiation 20.0 43200 < th dose independent rect. 24 7
942 147.47 wind 9.0 4320 > th dose independent rect. 14 1
943 147.47 radiation 1.0 43200 > th dose independent rect. 4 1
959 147.47 radiation 1.0 43200 > th dose dependent rect. 4 1
971 147.48 radiation 1.0 43200 < th dose independent rect. 22 7
985 147.50 humidity 60.0 14400 > th dose independent rect. 24 8
988 147.50 precipitation 0.1 14400 > th dose dependent rect. 4 1
993 147.51 radiation 1.0 43200 < th dose independent rect. 20 9
996 147.51 humidity 50.0 43200 > th dose independent rect. 15 21
999 147.51 wind 9.0 4320 > th dose dependent rect. 14 3