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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0468800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : YbhB and YbcL family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.05 (0.0403) R2 : 0.705
β1 : 1.01 (0.147) R2dD : 0.0331 R2D : -0.000695
β2 : 2.63 (0.0968) R2dC : 0.481 R2C : 0.463
β3 : -1.13 (0.0853) R2dE : 0.126 R2E : 0.153
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.733 (0.0876) R2dN8 : 0.0621 R2N8 : 0.057
σ : 0.75
deviance : 259.16
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_____
C
peak time of C : 13.8
E
wheather : temperature
threshold : 25.44
memory length : 44
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.48
open length of G : 12.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
249.53 0.742 5.06 0.969 2.64 -1.13 1.68 0.0543 0.718 13.8 25.33 68 3.23 12.3
248.03 0.734 5.05 0.991 2.65 -1.12 1.69 -- 0.729 13.8 25.45 44 3.5 12.1
258.97 0.75 5.06 0.976 2.64 -1.16 -- 0.524 0.694 13.8 25.3 61 3.27 12.3
259.16 0.75 5.05 1.01 2.63 -1.13 -- -- 0.733 13.8 25.44 44 3.48 12.2
651.13 1.19 5.08 1.09 -- -1.3 -- -0.0428 0.711 -- 25.22 25 3.42 12.2
310.74 0.826 5.03 1.14 2.84 -- 2.34 -- 0.969 14.9 -- -- -- --
329.38 0.85 5.02 1.19 2.85 -- -- -- 0.983 14.9 -- -- -- --
650.25 1.19 5.1 0.999 -- -1.3 -- -- 0.627 -- 25.3 23 3.43 12.2
286.18 0.788 5.07 -- 2.66 -1.25 -- -- 0.602 13.7 25.4 47 3.43 12.3
796.96 1.32 5.03 1.07 -- -- -- -- 0.91 -- -- -- -- --
366.7 0.896 5.05 -- 2.83 -- -- -- 0.851 14.9 -- -- -- --
674.99 1.21 5.12 -- -- -1.3 -- -- 0.511 -- 25.4 22 3.45 12.2
827.07 1.34 5.06 -- -- -- -- -- 0.791 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 255.53 temperature 15 30 > th dose dependent rect. 6 21
2 255.62 temperature 25 90 < th dose independent rect. 3 12
36 264.08 temperature 30 90 < th dose dependent rect. 3 12
47 265.45 temperature 25 90 < th dose independent sin 4 NA
52 266.35 temperature 25 90 > th dose independent sin 4 NA
53 266.37 temperature 25 90 < th dose independent rect. 3 20
62 267.60 temperature 25 10 > th dose independent rect. 6 6
74 268.40 temperature 25 10 > th dose independent rect. 6 8
75 268.41 temperature 15 10 > th dose dependent rect. 6 14
77 268.47 humidity 80 30 > th dose dependent rect. 3 22
85 268.72 temperature 15 30 > th dose dependent rect. 6 12
93 268.95 temperature 15 720 > th dose dependent rect. 6 1
105 269.38 temperature 25 10 > th dose independent rect. 6 12
111 269.62 humidity 90 90 > th dose independent rect. 3 20
115 269.73 temperature 25 10 > th dose independent rect. 6 10
146 271.07 temperature 20 30 > th dose dependent sin 4 NA
151 271.15 humidity 80 30 > th dose dependent rect. 7 23
171 271.91 temperature 25 10 > th dose independent rect. 6 14
176 271.98 humidity 80 30 > th dose dependent rect. 18 12
182 272.25 temperature 20 720 > th dose independent rect. 6 1
198 272.61 radiation 20 14400 > th dose dependent rect. 6 1
216 272.69 temperature 20 10 > th dose dependent rect. 6 10
230 273.00 humidity 80 30 > th dose dependent rect. 20 14
254 273.42 humidity 80 30 > th dose dependent rect. 18 16
265 273.53 temperature 20 10 > th dose dependent rect. 6 6
271 273.61 temperature 25 10 > th dose dependent sin 7 NA
281 273.74 temperature 25 90 > th dose independent rect. 1 10
296 273.96 temperature 20 30 > th dose dependent rect. 6 8
305 274.07 humidity 80 30 > th dose dependent rect. 12 18
313 274.10 temperature 30 90 < th dose dependent rect. 3 20
330 274.34 temperature 30 720 < th dose dependent rect. 3 2
340 274.45 humidity 80 30 > th dose dependent rect. 18 22
387 274.86 humidity 90 90 < th dose independent rect. 23 23
415 275.15 temperature 25 90 > th dose independent rect. 1 17
427 275.33 temperature 25 90 > th dose independent rect. 24 20
453 275.54 humidity 90 90 > th dose dependent no NA NA
454 275.54 humidity 90 90 > th dose dependent rect. 13 23
468 275.58 humidity 90 90 > th dose dependent rect. 23 23
583 276.30 humidity 90 90 > th dose independent rect. 18 17
596 276.35 humidity 90 90 > th dose independent rect. 18 21
639 276.48 temperature 20 720 > th dose independent rect. 5 12
661 276.57 humidity 80 30 > th dose dependent sin 8 NA
670 276.61 temperature 30 30 < th dose dependent sin 3 NA
674 276.62 temperature 25 90 < th dose independent rect. 19 22
675 276.62 wind 9 720 < th dose independent rect. 7 23
700 276.73 humidity 90 90 > th dose independent rect. 18 14
746 276.96 radiation 1 14400 > th dose dependent rect. 6 1
756 276.99 humidity 90 90 > th dose independent rect. 23 23
767 277.02 radiation 30 14400 < th dose dependent rect. 6 1
791 277.12 humidity 90 90 > th dose independent sin 7 NA
806 277.21 temperature 25 90 < th dose independent rect. 21 20
830 277.35 temperature 25 270 > th dose independent rect. 5 3
853 277.47 atmosphere 1010 14400 > th dose independent rect. 1 1
862 277.49 atmosphere 1010 14400 < th dose independent rect. 1 1
885 277.56 wind 9 720 < th dose independent rect. 16 23
943 277.81 humidity 90 90 < th dose independent sin 7 NA
946 277.82 humidity 90 90 > th dose independent rect. 10 22
990 278.00 humidity 90 90 > th dose independent rect. 14 21
994 278.02 radiation 20 14400 > th dose independent rect. 17 14
1000 278.03 temperature 30 10 < th dose dependent rect. 3 21