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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0468400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactose oxidase, central domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0178) R2 : 0.0114
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0857 (0.0374) R2dN8 : 0.0147 R2N8 : 0.0114
σ : 0.335
deviance : 51.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.45 0.32 3.05 -0.113 0.032 -0.425 -0.167 1.41 0.068 4.98 1.1 16 -- --
47.92 0.325 3.03 -0.0491 0.0516 -0.277 -0.33 -- 0.0839 4.57 1.076 16 -- --
46.52 0.318 3.05 -0.114 0.0311 -0.427 -- 1.46 0.0685 5.58 1.099 16 -- --
48.2 0.325 3.03 -0.0461 0.0544 -0.271 -- -- 0.0856 5.66 1.076 16 -- --
46.56 0.318 3.05 -0.116 -- -0.444 -- 1.48 0.0687 -- 1.078 16 -- --
50.31 0.333 3.03 -0.0181 0.135 -- -0.267 -- 0.0795 4.65 -- -- -- --
50.5 0.333 3.03 -0.0165 0.134 -- -- -- 0.0809 4.77 -- -- -- --
48.33 0.325 3.03 -0.047 -- -0.293 -- -- 0.0871 -- 1.076 16 -- --
48.25 0.325 3.03 -- 0.0548 -0.267 -- -- 0.0906 5.67 1.076 16 -- --
51.44 0.335 3.03 -0.0115 -- -- -- -- 0.0844 -- -- -- -- --
50.5 0.332 3.03 -- 0.133 -- -- -- 0.0828 4.77 -- -- -- --
48.39 0.325 3.03 -- -- -0.289 -- -- 0.0922 -- 1.076 16 -- --
51.45 0.335 3.03 -- -- -- -- -- 0.0857 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.84 atmosphere 1005.0 90 > th dose dependent rect. 2 1
3 38.94 wind 3.0 30 < th dose dependent rect. 2 1
4 38.95 wind 1.0 30 < th dose independent rect. 2 1
7 38.95 temperature 20.0 30 > th dose dependent rect. 2 1
10 38.96 atmosphere 1005.0 30 > th dose independent rect. 2 1
13 38.96 temperature 10.0 30 > th dose dependent rect. 2 1
17 38.97 temperature 20.0 30 > th dose independent rect. 2 1
18 38.97 humidity 80.0 30 > th dose independent rect. 2 1
21 38.98 temperature 10.0 30 > th dose independent rect. 2 1
23 38.98 temperature 30.0 30 < th dose independent rect. 2 1
24 38.98 humidity 50.0 30 > th dose independent rect. 2 1
27 38.98 atmosphere 995.0 30 > th dose independent rect. 2 1
28 38.98 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 38.98 radiation 1.0 30 < th dose independent rect. 2 1
35 38.98 precipitation 0.1 30 < th dose independent rect. 2 1
36 38.98 temperature 10.0 30 > th dose independent rect. 3 23
37 38.98 humidity 50.0 30 > th dose dependent rect. 2 1
41 38.98 radiation 1.0 30 < th dose dependent rect. 2 1
46 38.98 precipitation 0.1 30 < th dose dependent rect. 2 1
50 39.02 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 39.04 temperature 30.0 30 < th dose dependent rect. 2 1
58 39.15 wind 1.0 30 > th dose independent rect. 2 1
69 39.21 atmosphere 1000.0 30 > th dose independent rect. 3 23
105 39.36 precipitation 0.1 30 < th dose independent rect. 3 23
106 39.36 precipitation 0.1 30 < th dose dependent rect. 3 23
113 39.64 wind 9.0 30 < th dose independent rect. 3 23
117 39.81 radiation 10.0 43200 < th dose dependent rect. 3 1
119 39.83 radiation 1.0 4320 < th dose dependent rect. 3 1
131 39.85 wind 9.0 1440 < th dose independent rect. 3 1
132 39.85 temperature 10.0 1440 > th dose independent rect. 3 1
135 39.85 temperature 30.0 1440 < th dose independent rect. 3 1
139 39.85 humidity 50.0 1440 > th dose independent rect. 3 1
148 39.85 atmosphere 995.0 1440 > th dose independent rect. 3 1
149 39.85 radiation 1.0 1440 < th dose independent rect. 3 1
169 39.85 temperature 10.0 1440 > th dose independent rect. 4 23
192 41.12 humidity 50.0 30 > th dose independent rect. 3 23
248 43.09 humidity 90.0 90 < th dose independent rect. 2 1
262 43.88 atmosphere 1015.0 30 < th dose independent rect. 3 23
271 44.24 temperature 30.0 30 < th dose independent rect. 3 23
299 44.96 temperature 25.0 270 > th dose independent rect. 23 4
303 45.02 wind 1.0 10 < th dose independent rect. 11 16
307 45.06 wind 1.0 10 < th dose independent rect. 14 13
308 45.07 wind 1.0 10 < th dose independent rect. 17 10
318 45.10 wind 1.0 10 > th dose independent rect. 21 23
402 45.80 wind 1.0 10 > th dose independent sin 16 NA
445 46.01 wind 1.0 30 > th dose independent rect. 3 23
453 46.04 wind 1.0 30 > th dose dependent rect. 2 1
454 46.05 atmosphere 1015.0 1440 < th dose independent rect. 3 1
499 46.27 wind 9.0 30 < th dose dependent rect. 3 23
528 46.34 radiation 10.0 30 < th dose dependent rect. 3 23
559 46.56 humidity 50.0 30 > th dose dependent rect. 3 23
569 46.64 atmosphere 995.0 30 > th dose dependent rect. 3 23
599 46.81 wind 1.0 10 > th dose independent rect. 21 10
620 46.97 radiation 10.0 1440 < th dose dependent rect. 21 1
623 46.98 atmosphere 1005.0 30 > th dose independent rect. 20 1
626 46.99 atmosphere 1000.0 30 > th dose dependent rect. 20 1
632 47.00 humidity 90.0 30 < th dose independent rect. 20 1
637 47.01 temperature 10.0 1440 > th dose independent rect. 21 1
640 47.01 temperature 30.0 1440 < th dose independent rect. 21 1
644 47.01 humidity 50.0 1440 > th dose independent rect. 21 1
650 47.01 atmosphere 995.0 1440 > th dose independent rect. 21 1
651 47.01 radiation 1.0 1440 < th dose independent rect. 21 1
674 47.01 atmosphere 995.0 720 > th dose independent rect. 7 8
675 47.01 temperature 10.0 1440 > th dose independent rect. 22 23
715 47.03 wind 5.0 30 < th dose independent rect. 20 1
716 47.03 temperature 20.0 30 > th dose independent rect. 20 1
718 47.03 precipitation 0.1 720 < th dose independent rect. 19 8
719 47.03 radiation 10.0 30 < th dose independent rect. 3 23
720 47.03 wind 9.0 30 < th dose dependent rect. 20 1
722 47.03 precipitation 0.1 720 < th dose dependent rect. 19 8
723 47.04 wind 1.0 30 > th dose independent rect. 20 1
726 47.04 temperature 10.0 30 > th dose independent rect. 20 1
728 47.04 temperature 30.0 30 < th dose independent rect. 20 1
729 47.04 humidity 50.0 30 > th dose independent rect. 20 1
733 47.04 atmosphere 1010.0 30 < th dose independent rect. 20 1
735 47.04 radiation 1.0 30 < th dose independent rect. 20 1
740 47.04 precipitation 0.1 30 < th dose independent rect. 20 1
741 47.04 temperature 10.0 30 > th dose independent rect. 21 23
743 47.04 radiation 1.0 30 < th dose dependent rect. 20 1
748 47.04 precipitation 0.1 30 < th dose dependent rect. 20 1
752 47.05 temperature 10.0 30 > th dose dependent rect. 20 1
755 47.06 temperature 10.0 720 > th dose independent rect. 7 8
756 47.06 atmosphere 1015.0 720 < th dose independent rect. 7 8
757 47.06 temperature 10.0 720 > th dose independent rect. 15 16
760 47.06 humidity 50.0 30 > th dose dependent rect. 20 1
761 47.06 humidity 90.0 30 < th dose dependent rect. 20 1
768 47.10 wind 1.0 10 > th dose independent rect. 8 23
769 47.10 wind 1.0 30 > th dose dependent rect. 20 1
771 47.11 temperature 10.0 720 > th dose independent rect. 15 8
772 47.11 temperature 10.0 720 > th dose independent rect. 23 16
782 47.14 wind 1.0 10 > th dose independent no NA NA
785 47.14 temperature 30.0 30 < th dose dependent rect. 20 1
793 47.16 wind 9.0 720 < th dose independent rect. 19 8
794 47.16 precipitation 0.1 720 < th dose independent rect. 15 8
799 47.16 precipitation 0.1 720 < th dose dependent rect. 15 8
801 47.17 atmosphere 995.0 720 > th dose independent rect. 23 16
802 47.17 atmosphere 1015.0 30 < th dose dependent rect. 20 1
807 47.19 temperature 10.0 720 > th dose independent rect. 19 8
808 47.19 temperature 30.0 720 < th dose independent rect. 19 8
809 47.19 humidity 50.0 720 > th dose independent rect. 19 8
810 47.19 atmosphere 995.0 720 > th dose independent rect. 19 8
811 47.19 radiation 1.0 720 < th dose independent rect. 19 8
816 47.19 temperature 10.0 720 > th dose independent rect. 3 16
818 47.19 radiation 1.0 720 < th dose dependent rect. 19 8
827 47.21 temperature 10.0 30 > th dose dependent rect. 3 23
829 47.22 precipitation 0.1 720 < th dose independent rect. 15 16
833 47.22 precipitation 0.1 720 < th dose dependent rect. 15 16
835 47.25 atmosphere 995.0 720 > th dose independent rect. 15 16
841 47.27 atmosphere 995.0 720 > th dose independent rect. 3 16
844 47.28 temperature 10.0 720 > th dose independent rect. 3 8
845 47.28 atmosphere 995.0 720 > th dose independent rect. 3 8
846 47.28 temperature 10.0 720 > th dose independent rect. 11 16
858 47.31 precipitation 0.1 720 < th dose independent rect. 7 8
860 47.31 precipitation 0.1 720 < th dose dependent rect. 7 8
874 47.35 radiation 40.0 10 < th dose dependent rect. 14 12
880 47.37 humidity 50.0 720 > th dose independent rect. 3 8
898 47.38 wind 1.0 10 > th dose independent rect. 22 13
914 47.43 wind 9.0 720 < th dose independent rect. 3 8
916 47.44 wind 1.0 10 < th dose independent sin 16 NA
948 47.50 radiation 40.0 30 < th dose independent rect. 3 23
949 47.50 radiation 20.0 10 < th dose dependent rect. 14 12
952 47.52 precipitation 0.1 720 < th dose independent rect. 11 16
955 47.52 precipitation 0.1 720 < th dose dependent rect. 11 16
983 47.55 wind 1.0 30 < th dose dependent rect. 11 16