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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0468100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1618 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0176) R2 : 0.0224
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.12 (0.037) R2dN8 : 0.029 R2N8 : 0.0224
σ : 0.331
deviance : 50.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.31 0.323 3.16 0.067 0.167 -0.17 -0.246 -0.629 0.106 4.79 71 4450 -- --
47.84 0.322 3.16 0.0509 0.161 -0.181 -0.23 -- 0.0917 4.74 73 5724 -- --
47.43 0.321 3.15 0.0709 0.169 -0.166 -- -0.67 0.108 5.37 71 4501 -- --
47.94 0.322 3.16 0.042 0.161 -0.211 -- -- 0.077 5.66 72.92 5648 -- --
48.78 0.325 3.16 0.0922 -- -0.178 -- -0.65 0.106 -- 71 5760 -- --
48.53 0.327 3.15 0.0311 0.166 -- -0.254 -- 0.118 4.77 -- -- -- --
48.66 0.327 3.15 0.0326 0.168 -- -- -- 0.12 5.38 -- -- -- --
49.3 0.327 3.17 0.0464 -- -0.205 -- -- 0.0691 -- 73 5635 -- --
47.93 0.322 3.16 -- 0.168 -0.2 -- -- 0.067 5.82 74 5346 -- --
50.13 0.331 3.15 0.0383 -- -- -- -- 0.124 -- -- -- -- --
48.68 0.326 3.15 -- 0.169 -- -- -- 0.116 5.37 -- -- -- --
49.35 0.327 3.17 -- -- -0.224 -- -- 0.0562 -- 73 5636 -- --
50.17 0.331 3.15 -- -- -- -- -- 0.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.69 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 45.99 atmosphere 1005.0 90 > th dose dependent rect. 2 1
4 46.03 atmosphere 1005.0 10 > th dose dependent rect. 2 2
9 46.32 temperature 25.0 90 > th dose dependent rect. 1 1
10 46.36 temperature 25.0 90 > th dose independent rect. 1 1
12 46.46 temperature 25.0 270 > th dose independent rect. 19 11
13 46.46 atmosphere 995.0 720 > th dose independent rect. 23 16
16 46.49 radiation 1.0 4320 < th dose dependent rect. 3 1
21 46.52 temperature 20.0 30 > th dose dependent rect. 22 5
25 46.53 radiation 10.0 43200 < th dose dependent rect. 3 1
27 46.54 wind 9.0 1440 < th dose independent rect. 3 1
28 46.54 temperature 10.0 1440 > th dose independent rect. 3 1
31 46.54 temperature 30.0 1440 < th dose independent rect. 3 1
35 46.54 humidity 50.0 1440 > th dose independent rect. 3 1
44 46.54 atmosphere 995.0 1440 > th dose independent rect. 3 1
45 46.54 radiation 1.0 1440 < th dose independent rect. 3 1
65 46.54 temperature 10.0 1440 > th dose independent rect. 4 23
84 46.56 temperature 20.0 10 > th dose dependent rect. 2 1
88 46.57 atmosphere 1005.0 30 > th dose independent rect. 2 1
97 46.59 wind 1.0 30 > th dose independent rect. 2 1
98 46.59 wind 9.0 30 < th dose independent rect. 2 1
99 46.59 temperature 10.0 30 > th dose independent rect. 2 1
101 46.59 temperature 30.0 30 < th dose independent rect. 2 1
102 46.59 humidity 50.0 30 > th dose independent rect. 2 1
106 46.59 atmosphere 995.0 30 > th dose independent rect. 2 1
108 46.59 atmosphere 1010.0 30 < th dose independent rect. 2 1
110 46.59 radiation 1.0 30 < th dose independent rect. 2 1
115 46.59 precipitation 0.1 30 < th dose independent rect. 2 1
116 46.59 temperature 10.0 30 > th dose independent rect. 3 23
117 46.59 radiation 1.0 30 < th dose dependent rect. 2 1
123 46.59 precipitation 0.1 30 < th dose dependent rect. 2 1
126 46.60 wind 3.0 30 < th dose dependent rect. 2 1
127 46.60 humidity 50.0 30 > th dose dependent rect. 2 1
130 46.60 atmosphere 1010.0 30 < th dose dependent rect. 2 1
132 46.61 wind 3.0 30 < th dose independent rect. 2 1
140 46.61 temperature 25.0 720 > th dose dependent rect. 3 6
146 46.62 temperature 25.0 720 > th dose dependent rect. 6 3
153 46.64 temperature 30.0 30 < th dose dependent rect. 2 1
156 46.66 precipitation 0.1 10 < th dose independent rect. 3 23
158 46.66 precipitation 0.1 10 < th dose dependent rect. 3 23
200 46.71 wind 9.0 30 < th dose independent rect. 3 23
217 46.77 atmosphere 1000.0 10 > th dose independent rect. 16 10
219 46.78 humidity 90.0 90 < th dose independent rect. 2 1
228 46.81 wind 3.0 30 < th dose dependent rect. 22 5
230 46.83 temperature 25.0 270 > th dose independent rect. 22 6
231 46.83 precipitation 0.1 720 < th dose independent rect. 11 16
233 46.83 temperature 20.0 30 > th dose dependent rect. 20 7
234 46.83 precipitation 0.1 720 < th dose dependent rect. 11 16
237 46.85 temperature 25.0 270 > th dose independent rect. 22 8
241 46.86 precipitation 0.1 720 < th dose independent rect. 15 8
243 46.86 precipitation 0.1 720 < th dose dependent rect. 15 8
247 46.87 temperature 25.0 720 > th dose independent rect. 15 12
250 46.88 humidity 90.0 90 < th dose independent rect. 1 4
261 46.90 humidity 50.0 30 > th dose independent rect. 3 23
265 46.90 humidity 80.0 14400 < th dose dependent rect. 3 6
274 46.92 humidity 80.0 14400 < th dose dependent rect. 21 13
280 46.95 radiation 10.0 720 > th dose independent rect. 17 16
292 46.97 radiation 10.0 720 > th dose independent rect. 6 3
307 46.97 temperature 20.0 10 > th dose dependent rect. 22 10
316 47.00 temperature 10.0 720 > th dose independent rect. 15 8
318 47.00 temperature 10.0 720 > th dose independent rect. 23 16
321 47.00 wind 3.0 30 < th dose dependent rect. 20 7
328 47.02 temperature 25.0 720 > th dose independent rect. 6 3
330 47.02 wind 9.0 720 < th dose independent rect. 3 8
331 47.02 temperature 10.0 720 > th dose independent rect. 3 8
332 47.02 atmosphere 995.0 720 > th dose independent rect. 3 8
333 47.02 temperature 10.0 720 > th dose independent rect. 11 16
341 47.03 humidity 70.0 14400 > th dose independent rect. 8 2
355 47.03 wind 3.0 30 < th dose dependent rect. 22 10
356 47.04 humidity 70.0 14400 < th dose independent rect. 8 2
365 47.05 atmosphere 1000.0 30 > th dose independent rect. 8 18
371 47.05 wind 3.0 30 < th dose dependent rect. 11 16
383 47.06 humidity 70.0 14400 < th dose independent rect. 20 14
385 47.06 atmosphere 1000.0 30 > th dose independent rect. 23 23
389 47.06 temperature 25.0 270 > th dose dependent rect. 22 8
390 47.06 wind 3.0 30 < th dose dependent rect. 13 14
400 47.08 temperature 25.0 720 > th dose independent rect. 8 1
404 47.08 atmosphere 1000.0 720 > th dose independent rect. 21 14
428 47.09 wind 3.0 30 < th dose independent rect. 22 10
440 47.09 atmosphere 995.0 30 > th dose dependent rect. 3 23
441 47.10 temperature 25.0 720 > th dose independent sin 14 NA
445 47.10 humidity 50.0 720 > th dose independent rect. 3 8
447 47.10 radiation 10.0 4320 < th dose dependent rect. 23 1
450 47.10 wind 3.0 30 < th dose dependent rect. 15 12
452 47.11 humidity 90.0 720 < th dose independent rect. 1 3
463 47.11 wind 3.0 30 < th dose dependent rect. 11 21
464 47.12 temperature 25.0 270 > th dose independent sin 12 NA
469 47.12 atmosphere 1000.0 10 < th dose independent rect. 7 20
477 47.13 temperature 25.0 270 > th dose independent rect. 22 2
478 47.13 atmosphere 1000.0 30 > th dose independent rect. 14 12
489 47.13 temperature 20.0 10 > th dose dependent rect. 20 12
497 47.14 temperature 30.0 270 < th dose independent rect. 8 23
512 47.16 temperature 25.0 720 < th dose independent rect. 23 2
538 47.18 humidity 70.0 4320 > th dose independent rect. 10 1
557 47.18 temperature 30.0 720 < th dose independent rect. 15 16
561 47.18 temperature 20.0 90 > th dose dependent rect. 22 1
604 47.21 humidity 80.0 14400 < th dose dependent sin 8 NA
626 47.22 humidity 50.0 10 > th dose independent rect. 2 14
635 47.23 humidity 80.0 720 < th dose independent rect. 8 1
636 47.23 humidity 70.0 4320 < th dose independent rect. 10 1
640 47.23 temperature 25.0 720 < th dose independent rect. 21 5
643 47.23 radiation 20.0 270 > th dose independent rect. 14 20
663 47.24 radiation 40.0 720 < th dose independent rect. 15 8
665 47.24 atmosphere 1000.0 720 > th dose independent rect. 23 10
669 47.24 temperature 30.0 1440 < th dose independent rect. 15 20
670 47.24 atmosphere 1000.0 90 > th dose independent rect. 9 23
671 47.24 wind 1.0 30 > th dose dependent rect. 2 1
672 47.24 humidity 90.0 90 < th dose dependent rect. 2 1
688 47.25 radiation 10.0 720 > th dose independent sin 10 NA
694 47.25 temperature 30.0 4320 < th dose independent rect. 23 10
695 47.25 temperature 30.0 1440 > th dose independent rect. 15 20
698 47.25 wind 3.0 30 < th dose dependent sin 11 NA
710 47.25 wind 3.0 30 < th dose dependent rect. 16 16
711 47.25 atmosphere 1000.0 10 < th dose dependent rect. 7 20
759 47.26 temperature 25.0 270 > th dose dependent rect. 24 6
769 47.27 radiation 40.0 720 > th dose independent rect. 9 1
777 47.27 humidity 50.0 30 > th dose independent rect. 16 10
778 47.27 radiation 20.0 10 < th dose independent rect. 16 10
782 47.27 wind 1.0 30 > th dose independent rect. 23 23
791 47.28 temperature 25.0 720 > th dose independent rect. 20 1
800 47.28 temperature 10.0 1440 > th dose independent rect. 17 10
804 47.28 radiation 30.0 1440 < th dose independent rect. 17 10
810 47.28 temperature 10.0 1440 > th dose independent rect. 3 14
816 47.28 atmosphere 1000.0 10 > th dose independent rect. 10 16
833 47.29 humidity 80.0 30 > th dose independent rect. 22 1
834 47.29 temperature 30.0 1440 < th dose independent rect. 15 3
844 47.29 wind 9.0 30 < th dose independent rect. 16 10
846 47.29 wind 3.0 30 < th dose independent rect. 20 12
853 47.29 humidity 50.0 14400 > th dose dependent rect. 8 1
859 47.29 radiation 30.0 10 < th dose dependent rect. 16 10
868 47.30 radiation 10.0 270 > th dose independent sin 12 NA
870 47.30 wind 9.0 1440 < th dose independent rect. 23 1
871 47.30 temperature 25.0 30 > th dose independent rect. 22 1
872 47.30 temperature 10.0 1440 > th dose independent rect. 23 1
879 47.30 humidity 50.0 1440 > th dose independent rect. 23 1
889 47.30 atmosphere 995.0 1440 > th dose independent rect. 23 1
890 47.30 radiation 1.0 1440 < th dose independent rect. 23 1
916 47.30 wind 3.0 10 < th dose independent rect. 22 6
920 47.30 atmosphere 1015.0 720 < th dose independent rect. 3 8
924 47.30 temperature 10.0 10 > th dose independent rect. 16 10
932 47.30 radiation 10.0 10 < th dose independent rect. 14 12
934 47.30 temperature 10.0 10 > th dose independent rect. 2 14
938 47.30 atmosphere 1015.0 10 < th dose independent rect. 2 14
947 47.30 temperature 10.0 1440 > th dose independent rect. 24 23
967 47.31 temperature 30.0 270 < th dose independent sin 20 NA
968 47.31 temperature 30.0 1440 > th dose independent rect. 15 2
989 47.31 temperature 30.0 1440 < th dose independent rect. 15 13
990 47.31 temperature 30.0 4320 < th dose independent rect. 20 13
994 47.31 precipitation 0.1 10 < th dose independent rect. 2 14